Non-Coding RNA Search

Ss1.1-Pig4-TMW8034D15.3

Sequence:


               
               AGTCTTGTTCAGCCGGTGTGGTGCTCGTACTTCCCTACGCTGTCGCAGAGAGTCGCTGCC
GAGTGGGCGCTCGGTGTTCGGGTCGTCATGGCTGGTTACGAATACGTGAGCCCGGAGCAG
CTGGCTGGCTTTGATAAGTACAAGTACAGTGCTGTGGATACGAACCCGCTCTCTCTGTAC
GTCATGCATCCGTTTTGGAACACTGTGGTAAAGATATTTCCTACTTGGTTGGCTCCAAAT
CTGATAACCTTTTCTGGCTTTCTGCTGGTTGTATTCAATTTTCTGCTTATGGCATACTTT
GATCCTGACTTTTATGCTTCAGCACCAGGTCACAAGCATGTACCTGACTGGGTTTGGATC
GTAGTGGGCATCCTCAACTTCATAGCCTACACTCTAGATGGTGTGGATGGAAAGCAAGCC
CGTAGAACCAATTCCAGCACCCCGTTAGGAGAACTCTTTGACCATGGCTTAGACAGTTGG
TCATGTGTTTACTTTGTTGTAACTGTGTATTCCATTTTTGGACGAGGATCATCTGGTGTC
AGTGTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTTTATTTTCTTTCATCCTGTCCCAC
TGGGAAAAGTATAACACAGGGATTCTTTTCCTGCCATGGGGATATGACGTTAGCCAGGTG
GTAAGTATGTGTTCTTCCTTAATTTGCAACATGGTCATGAATTTTGGGGAAACTTTTTGT
TGTTCCTTCTTTATTGACCTTATGCTTTTTTGGTTAGAACTGATGGGTGCTTTAAATTTT
TTTCTTTTTTCTTTTATATTATTTCTCCGTTATTTATGGGCAATTTTAAATAGGTACAAA
AGCAGAGAGAATAATATAGTGAACCCTTATGTACCTATTACTTAGCTTCAGCAGTTAACA
CATGGCCAATCTAGTGTCATGTATAATCTTGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTTGTTCAGCCGGTGTGGTGCTCGTACTTCCCTACGCTGTCGCAGAGAGTCGCTGCC
GAGTGGGCGCTCGGTGTTCGGGTCGTCATGGCTGGTTACGAATACGTGAGCCCGGAGCAG
CTGGCTGGCTTTGATAAGTACAAGTACAGTGCTGTGGATACGAACCCGCTCTCTCTGTAC
GTCATGCATCCGTTTTGGAACACTGTGGTAAAGATATTTCCTACTTGGTTGGCTCCAAAT
CTGATAACCTTTTCTGGCTTTCTGCTGGTTGTATTCAATTTTCTGCTTATGGCATACTTT
GATCCTGACTTTTATGCTTCAGCACCAGGTCACAAGCATGTACCTGACTGGGTTTGGATC
GTAGTGGGCATCCTCAACTTCATAGCCTACACTCTAGATGGTGTGGATGGAAAGCAAGCC
CGTAGAACCAATTCCAGCACCCCGTTAGGAGAACTCTTTGACCATGGCTTAGACAGTTGG
TCATGTGTTTACTTTGTTGTAACTGTGTATTCCATTTTTGGACGAGGATCATCTGGTGTC
AGTGTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTTTATTTTCTTTCATCCTGTCCCAC
TGGGAAAAGTATAACACAGGGATTCTTTTCCTGCCATGGGGATATGACGTTAGCCAGGTG
GTAAGTATGTGTTCTTCCTTAATTTGCAACATGGTCATGAATTTTGGGGAAACTTTTTGT
TGTTCCTTCTTTATTGACCTTATGCTTTTTTGGTTAGAACTGATGGGTGCTTTAAATTTT
TTTCTTTTTTCTTTTATATTATTTCTCCGTTATTTATGGGCAATTTTAAATAGGTACAAA
AGCAGAGAGAATAATATAGTGAACCCTTATGTACCTATTACTTAGCTTCAGCAGTTAACA
CATGGCCAATCTAGTGTCATGTATAATCTTGCTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57098169|ref|XP_532896.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57098169|ref|XP_532896.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               435-554, + strand, RNAz p=0.687911

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               435-554, + strand, RNAz p=0.687911

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-144, gnl|bosTau2|chr11 (54809922-54810064)
               

               
               1-144, gnl|canFam2|chr17 (23411888-23412435)
               

               
               1-144, gnl|dasNov1|scaffold_6343 (23465-22949)
               

               
               1-144, gnl|echTel1|scaffold_313162 (96823-96275)
               

               
               1-144, gnl|hg17|chr2 (26480453-26480997)
               

               
               1-144, gnl|Hg17|chr2 (26480665-26480808)
               

               
               1-144, gnl|loxAfr1|scaffold_1092 (106875-107406)
               

               
               1-144, gnl|mm7|chr5 (29265370-29265883)
               

               
               1-144, gnl|Mm7|chr5 (29265548-29265698)
               

               
               1-144, gnl|monDom2|scaffold_1 (150337278-150336730)
               

               
               1-144, gnl|oryCun1|scaffold_214661 (15427-15948)
               

               
               1-144, gnl|panTro1|chr12 (27396309-27396853)
               

               
               1-144, gnl|rheMac2|chr13 (26287326-26287873)
               

               
               1-144, gnl|rn3|chr6 (26099953-26099443)
               


               
               212-322, gnl|bosTau2|chr11 (54828741-54828851)
               

               
               212-322, gnl|Hg17|chr2 (26499349-26499459)
               

               
               212-322, gnl|Mm7|chr5 (29281318-29281428)
               


               
               396-933, gnl|bosTau2|chr11 (54835575-54836108)
               

               
               396-933, gnl|Hg17|chr2 (26507884-26508498)
               

               
               396-933, gnl|Mm7|chr5 (29288984-29290001)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr11 (54809922-54810064)
               

               
               1-144, gnl|canFam2|chr17 (23411888-23412435)
               

               
               1-144, gnl|dasNov1|scaffold_6343 (23465-22949)
               

               
               1-144, gnl|echTel1|scaffold_313162 (96823-96275)
               

               
               1-144, gnl|hg17|chr2 (26480453-26480997)
               

               
               1-144, gnl|Hg17|chr2 (26480665-26480808)
               

               
               1-144, gnl|loxAfr1|scaffold_1092 (106875-107406)
               

               
               1-144, gnl|mm7|chr5 (29265370-29265883)
               

               
               1-144, gnl|Mm7|chr5 (29265548-29265698)
               

               
               1-144, gnl|monDom2|scaffold_1 (150337278-150336730)
               

               
               1-144, gnl|oryCun1|scaffold_214661 (15427-15948)
               

               
               1-144, gnl|panTro1|chr12 (27396309-27396853)
               

               
               1-144, gnl|rheMac2|chr13 (26287326-26287873)
               

               
               1-144, gnl|rn3|chr6 (26099953-26099443)
               


               
               212-322, gnl|bosTau2|chr11 (54828741-54828851)
               

               
               212-322, gnl|Hg17|chr2 (26499349-26499459)
               

               
               212-322, gnl|Mm7|chr5 (29281318-29281428)
               


               
               396-933, gnl|bosTau2|chr11 (54835575-54836108)
               

               
               396-933, gnl|Hg17|chr2 (26507884-26508498)
               

               
               396-933, gnl|Mm7|chr5 (29288984-29290001)

	1-144, gnl\|bosTau2\|chr11 (54809922-54810064)
	1-144, gnl\|canFam2\|chr17 (23411888-23412435)
	1-144, gnl\|dasNov1\|scaffold_6343 (23465-22949)
	1-144, gnl\|echTel1\|scaffold_313162 (96823-96275)
	1-144, gnl\|hg17\|chr2 (26480453-26480997)
	1-144, gnl\|Hg17\|chr2 (26480665-26480808)
	1-144, gnl\|loxAfr1\|scaffold_1092 (106875-107406)
	1-144, gnl\|mm7\|chr5 (29265370-29265883)
	1-144, gnl\|Mm7\|chr5 (29265548-29265698)
	1-144, gnl\|monDom2\|scaffold_1 (150337278-150336730)
	1-144, gnl\|oryCun1\|scaffold_214661 (15427-15948)
	1-144, gnl\|panTro1\|chr12 (27396309-27396853)
	1-144, gnl\|rheMac2\|chr13 (26287326-26287873)
	1-144, gnl\|rn3\|chr6 (26099953-26099443)

	212-322, gnl\|bosTau2\|chr11 (54828741-54828851)
	212-322, gnl\|Hg17\|chr2 (26499349-26499459)
	212-322, gnl\|Mm7\|chr5 (29281318-29281428)

	396-933, gnl\|bosTau2\|chr11 (54835575-54836108)
	396-933, gnl\|Hg17\|chr2 (26507884-26508498)
	396-933, gnl\|Mm7\|chr5 (29288984-29290001)