Ss1.1-Pig4-TMW8034E10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCCAGGACTGCCCTTATCTCTGGGAACACATGAAAAAATACACTGAAATAACTGCGAC GTATTTCCAGGGAGTCCGTCTTGACAACTGCCACTCAACACCTCTTCATGTAGCCGAGTA CATGTTGGATGCTGCTAGGAAATTGCAACCCAATTTGTATGTAGTAGCTGAACTGTTCAC AGGAAGTGAAGATCTGGACAATATCTTTGTTACTAGACTGGGCATTAGTTCCTTAATAAG AGAGGCAATGAGTGCATATAACAGTCATGAGGAAGGTAGATTAGTTTATCGATATGGAGG AGAACCCGTTGGATCCTTCGTTCAGCCCTGTTTGAGGCCTCTAATGCCAGCTATCGCCCA CGCCCTGTTTATGGATATTACCCACGATAACGAGTGTCCCATTGTGCACAGGTCGGCATA TGATGCTCTGCCAAGTTCCACGATTGTTTCCATGGCATGTTGCGCTAGTGGAAGTACTAA GGGCTATGACGAATTAGTGCCGCATCAGATTTCAGTAGTTTCTGAAGAACGGTTTTACAC TAAGTGGAATCCTGCAGCGTCGCCATCAGATACAGGTGAAGTTAATTTCCAGAGTGGCAT CATTGCAGCCAGGTGTGCTATCAATAAACTTCACCAAGAGCTTGGAGCCAAGGGTTTCAT TCAGGTATATGTGGATCAAGTTGATGAAGACATAGTGGCAGTAACAAGACACTCACCCAG TATCCATCAATCAGTTGTGATGTAACATGATAATGTGAGAGGAAAGAACATATAGATGTA TGTGTGACTGGGTCAGCGTGCTGTGAAGTAGAAAATTTACAAAACACTGTAAATCAGCTA TAATGGCAAAAATAAAAATCATTACAAATATGTCCCCCCCTCCAAATAAAAAGAAAAAAA GAAGTAAGTGAAGTACCCCAGACAAGCAGAAAATCTGTCAGAGCAGCCTGGCTTTAGAAT ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------GGTACAGCCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCCAGGACTGCCCTTATCTCTGGGAACACATGAAAAAATACACTGAAATAACTGCGAC GTATTTCCAGGGAGTCCGTCTTGACAACTGCCACTCAACACCTCTTCATGTAGCCGAGTA CATGTTGGATGCTGCTAGGAAATTGCAACCCAATTTGTATGTAGTAGCTGAACTGTTCAC AGGAAGTGAAGATCTGGACAATATCTTTGTTACTAGACTGGGCATTAGTTCCTTAATAAG AGAGGCAATGAGTGCATATAACAGTCATGAGGAAGGTAGATTAGTTTATCGATATGGAGG AGAACCCGTTGGATCCTTCGTTCAGCCCTGTTTGAGGCCTCTAATGCCAGCTATCGCCCA CGCCCTGTTTATGGATATTACCCACGATAACGAGTGTCCCATTGTGCACAGGTCGGCATA TGATGCTCTGCCAAGTTCCACGATTGTTTCCATGGCATGTTGCGCTAGTGGAAGTACTAA GGGCTATGACGAATTAGTGCCGCATCAGATTTCAGTAGTTTCTGAAGAACGGTTTTACAC TAAGTGGAATCCTGCAGCGTCGCCATCAGATACAGGTGAAGTTAATTTCCAGAGTGGCAT CATTGCAGCCAGGTGTGCTATCAATAAACTTCACCAAGAGCTTGGAGCCAAGGGTTTCAT TCAGGTATATGTGGATCAAGTTGATGAAGACATAGTGGCAGTAACAAGACACTCACCCAG TATCCATCAATCAGTTGTGATGTAACATGATAATGTGAGAGGAAAGAACATATAGATGTA TGTGTGACTGGGTCAGCGTGCTGTGAAGTAGAAAATTTACAAAACACTGTAAATCAGCTA TAATGGCAAAAATAAAAATCATTACAAATATGTCCCCCCCTCCAAATAAAAAGAAAAAAA GAAGTAAGTGAAGTACCCCAGACAAGCAGAAAATCTGTCAGAGCAGCCTGGCTTTAGAAT ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------GGTACAGCCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 241-359, + strand, RNAz p=0.567447 | |
| 544-663, + strand, RNAz p=0.54462 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 241-359, + strand, RNAz p=0.567447 | |
| 544-663, + strand, RNAz p=0.54462 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 6-122, gnl|bosTau2|chr3 (35120767-35120650) | |
| 6-122, gnl|Hg17|chr1 (100055293-100055410) | |
| 6-122, gnl|Mm7|chr3 (116557918-116557801) | |
| 241-406, gnl|bosTau2|chr3 (35117866-35117701) | |
| 241-406, gnl|canFam2|chr6 (53132823-53132668) | |
| 241-406, gnl|danRer3|chr17 (11865629-11865784) | |
| 241-406, gnl|dasNov1|scaffold_10467 (1985-1830) | |
| 241-406, gnl|fr1|chrUn (146232284-146232438) | |
| 241-406, gnl|galGal2|chr8 (12436892-12436738) | |
| 241-406, gnl|hg17|chr1 (100058195-100058350) | |
| 241-406, gnl|Hg17|chr1 (100058207-100058372) | |
| 241-406, gnl|loxAfr1|scaffold_11617 (39781-39936) | |
| 241-406, gnl|mm7|chr3 (116555120-116554965) | |
| 241-406, gnl|Mm7|chr3 (116555106-116554941) | |
| 241-406, gnl|monDom2|scaffold_0 (19208453-19208300) | |
| 241-406, gnl|oryCun1|scaffold_202972 (58750-58595) | |
| 241-406, gnl|panTro1|chr1 (99107705-99107860) | |
| 241-406, gnl|rheMac2|chr1 (102939619-102939774) | |
| 241-406, gnl|rn3|chr2 (212980661-212980506) | |
| 241-406, gnl|tetNig1|chrUn_random (18975620-18975473) | |
| 241-406, gnl|xenTro1|scaffold_74 (1888144-1888326) | |
| 505-665, gnl|bosTau2|chr3 (35117198-35117038) | |
| 505-665, gnl|canFam2|chr6 (53131659-53131493) | |
| 505-665, gnl|danRer3|chrNA (47107427-47107265) | |
| 505-665, gnl|dasNov1|scaffold_10467 (1321-1155) | |
| 505-665, gnl|echTel1|scaffold_295138 (19832-19665) | |
| 505-665, gnl|galGal2|chr8 (12435809-12435646) | |
| 505-665, gnl|hg17|chr1 (100058867-100059033) | |
| 505-665, gnl|Hg17|chr1 (100058865-100059025) | |
| 505-665, gnl|loxAfr1|scaffold_11617 (40449-40611) | |
| 505-665, gnl|mm7|chr3 (116554504-116554338) | |
| 505-665, gnl|Mm7|chr3 (116554504-116554344) | |
| 505-665, gnl|monDom2|scaffold_0 (19206515-19206349) | |
| 505-665, gnl|oryCun1|scaffold_202972 (58086-57920) | |
| 505-665, gnl|panTro1|chr1 (99108379-99108545) | |
| 505-665, gnl|rheMac2|chr1 (102940287-102940453) | |
| 505-665, gnl|rn3|chr2 (212980055-212979889) | |
| 505-665, gnl|tetNig1|chrUn_random (18975144-18974978) | |
| 505-665, gnl|xenTro1|scaffold_74 (1889312-1889473) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-122, gnl|bosTau2|chr3 (35120767-35120650) | |
| 6-122, gnl|Hg17|chr1 (100055293-100055410) | |
| 6-122, gnl|Mm7|chr3 (116557918-116557801) | |
| 241-406, gnl|bosTau2|chr3 (35117866-35117701) | |
| 241-406, gnl|canFam2|chr6 (53132823-53132668) | |
| 241-406, gnl|danRer3|chr17 (11865629-11865784) | |
| 241-406, gnl|dasNov1|scaffold_10467 (1985-1830) | |
| 241-406, gnl|fr1|chrUn (146232284-146232438) | |
| 241-406, gnl|galGal2|chr8 (12436892-12436738) | |
| 241-406, gnl|hg17|chr1 (100058195-100058350) | |
| 241-406, gnl|Hg17|chr1 (100058207-100058372) | |
| 241-406, gnl|loxAfr1|scaffold_11617 (39781-39936) | |
| 241-406, gnl|mm7|chr3 (116555120-116554965) | |
| 241-406, gnl|Mm7|chr3 (116555106-116554941) | |
| 241-406, gnl|monDom2|scaffold_0 (19208453-19208300) | |
| 241-406, gnl|oryCun1|scaffold_202972 (58750-58595) | |
| 241-406, gnl|panTro1|chr1 (99107705-99107860) | |
| 241-406, gnl|rheMac2|chr1 (102939619-102939774) | |
| 241-406, gnl|rn3|chr2 (212980661-212980506) | |
| 241-406, gnl|tetNig1|chrUn_random (18975620-18975473) | |
| 241-406, gnl|xenTro1|scaffold_74 (1888144-1888326) | |
| 505-665, gnl|bosTau2|chr3 (35117198-35117038) | |
| 505-665, gnl|canFam2|chr6 (53131659-53131493) | |
| 505-665, gnl|danRer3|chrNA (47107427-47107265) | |
| 505-665, gnl|dasNov1|scaffold_10467 (1321-1155) | |
| 505-665, gnl|echTel1|scaffold_295138 (19832-19665) | |
| 505-665, gnl|galGal2|chr8 (12435809-12435646) | |
| 505-665, gnl|hg17|chr1 (100058867-100059033) | |
| 505-665, gnl|Hg17|chr1 (100058865-100059025) | |
| 505-665, gnl|loxAfr1|scaffold_11617 (40449-40611) | |
| 505-665, gnl|mm7|chr3 (116554504-116554338) | |
| 505-665, gnl|Mm7|chr3 (116554504-116554344) | |
| 505-665, gnl|monDom2|scaffold_0 (19206515-19206349) | |
| 505-665, gnl|oryCun1|scaffold_202972 (58086-57920) | |
| 505-665, gnl|panTro1|chr1 (99108379-99108545) | |
| 505-665, gnl|rheMac2|chr1 (102940287-102940453) | |
| 505-665, gnl|rn3|chr2 (212980055-212979889) | |
| 505-665, gnl|tetNig1|chrUn_random (18975144-18974978) | |
| 505-665, gnl|xenTro1|scaffold_74 (1889312-1889473) |