Non-Coding RNA Search

Ss1.1-Pig4-TMW8034I07.3

Sequence:


               
               GTAAAAATCACTGTCTCTTATTTTCAAAGGAATTCTATATATGATGTTAAAGCTGTTCCC
TACAGTAGATAGTATCATATAATGGTTAAAAATGGTTAACAGTCCAGACTTTTTTGCCAG
GTTGCTTGAATTCAGCTCTTTGTGTTACCACTTGGTTGCTGTGTGACCTTGGACATAACT
CTTAGCTTCTCTGTACCACAGTTTTTTCAAGTGTATGGTGGTGATGATAATACTCTGTAC
TTCCGATATTCTAAAGATTTAATAATGAGTTAGTGTATGTAAAACACTTAATATTTTTCC
CAACATATAGTATAAGTATTATATTAGCTATTTTTATAATTATTAGAAATCCTTGTTTGC
TAAGAGTTTTCTTGTTCGTATGTTTTGAAATCAGGAAGAGATATTGAATTCTTGTTTCTT
TAACTGATATCTAATAGTTCCACTGGATTTTGTTGGCTTCTTATTGTTAGATTTATGCCA
TGAGTAGAATTGAATGAATGTGTCTTTTGAAGCTTTGGTGTCGTTAGTGGTAGTTCCCAT
TTACTTTTGTTTTTCCGGATTGCCTTTTAGAAGCTCCGTTGATGATTTTACCTTCCTAAC
CATCCAAACATATGCGCCTATTTGCAGTCATTAAAGAATCTCTTACCTACGGCCAGGGAA
ATATGTTTCTTAGTGGAAGTAGTTTACTTTGTCTATATTTTGGTATTTTACTAACAGATT
AGTGGTTCATTTATAATTCTAAGACTAGGTGATTAGTTACTAGATGGAGAAGCAGTTTAG
GGAGAATTTACCAAGACAAGGAGTTTTGTTTCTGGTTTCTCTTGAAAAAAATCACTAATG
TTGAAAACTCTGTGTACAAACTTTATGGAGTTATTTGTATACAGCTGGGACTGAATTTAT
GGACTGCTTTTCTGACTTGCTAAAAAGCTAAAGATTGACAGCCCCTTTCATACTGCATTA
TCCAGCTTGGCTTTTAACTCCAAGAGAACAGTGTTCACAAATTGATGCTCTATTCCTTTG
GGGTTGGTATAGAAGCATTAAATTGTACTAAAATATTCATATGTGAGTGCATTTAGCTGA
AAGCAATTGATGTCCTATTCCCTAGAGGGCAAAGAGAAATGCTGTATAGACCTGTAGTCC
AGAAAACACCCTAAGCATGCTTCTTAGAGTTAATTACATGGCCTGGATGATCAAAGCCCT
TACAATGAAGCTTAAAATGACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAAATCACTGTCTCTTATTTTCAAAGGAATTCTATATATGATGTTAAAGCTGTTCCC
TACAGTAGATAGTATCATATAATGGTTAAAAATGGTTAACAGTCCAGACTTTTTTGCCAG
GTTGCTTGAATTCAGCTCTTTGTGTTACCACTTGGTTGCTGTGTGACCTTGGACATAACT
CTTAGCTTCTCTGTACCACAGTTTTTTCAAGTGTATGGTGGTGATGATAATACTCTGTAC
TTCCGATATTCTAAAGATTTAATAATGAGTTAGTGTATGTAAAACACTTAATATTTTTCC
CAACATATAGTATAAGTATTATATTAGCTATTTTTATAATTATTAGAAATCCTTGTTTGC
TAAGAGTTTTCTTGTTCGTATGTTTTGAAATCAGGAAGAGATATTGAATTCTTGTTTCTT
TAACTGATATCTAATAGTTCCACTGGATTTTGTTGGCTTCTTATTGTTAGATTTATGCCA
TGAGTAGAATTGAATGAATGTGTCTTTTGAAGCTTTGGTGTCGTTAGTGGTAGTTCCCAT
TTACTTTTGTTTTTCCGGATTGCCTTTTAGAAGCTCCGTTGATGATTTTACCTTCCTAAC
CATCCAAACATATGCGCCTATTTGCAGTCATTAAAGAATCTCTTACCTACGGCCAGGGAA
ATATGTTTCTTAGTGGAAGTAGTTTACTTTGTCTATATTTTGGTATTTTACTAACAGATT
AGTGGTTCATTTATAATTCTAAGACTAGGTGATTAGTTACTAGATGGAGAAGCAGTTTAG
GGAGAATTTACCAAGACAAGGAGTTTTGTTTCTGGTTTCTCTTGAAAAAAATCACTAATG
TTGAAAACTCTGTGTACAAACTTTATGGAGTTATTTGTATACAGCTGGGACTGAATTTAT
GGACTGCTTTTCTGACTTGCTAAAAAGCTAAAGATTGACAGCCCCTTTCATACTGCATTA
TCCAGCTTGGCTTTTAACTCCAAGAGAACAGTGTTCACAAATTGATGCTCTATTCCTTTG
GGGTTGGTATAGAAGCATTAAATTGTACTAAAATATTCATATGTGAGTGCATTTAGCTGA
AAGCAATTGATGTCCTATTCCCTAGAGGGCAAAGAGAAATGCTGTATAGACCTGTAGTCC
AGAAAACACCCTAAGCATGCTTCTTAGAGTTAATTACATGGCCTGGATGATCAAAGCCCT
TACAATGAAGCTTAAAATGACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               974-1133, - strand, RNAz p=0.890965

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               974-1133, - strand, RNAz p=0.890965

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1082-1148, + strand, RNAmicro p=0.938651

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1082-1148, + strand, RNAmicro p=0.938651

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               87-1224, gnl|bosTau2|chr21 (21049374-21048214)
               

               
               87-1224, gnl|Hg17|chr15 (74325760-74324526)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-1224, gnl|bosTau2|chr21 (21049374-21048214)
               

               
               87-1224, gnl|Hg17|chr15 (74325760-74324526)

	87-1224, gnl\|bosTau2\|chr21 (21049374-21048214)
	87-1224, gnl\|Hg17\|chr15 (74325760-74324526)