Ss1.1-Pig4-TMW8034I22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTACAGTGCTCTTAACCCACGAGAATCCTGGGACATGTGGCATCCCACGCTGGTGGCCGA AGCTTTATTTGCTATCGCAAACATATTCAGTTCCCTGCGCCTGATCTCACTGTTCACGGC CAATTCTCACCTGGGGCCTCTGCAGATATCTCTGGGAAGGATGCTCCTGGACATTCTCAA GTTTCTATTCATCTACTGCCTCGTGCTGCTAGCATTTGCAAATGGCCTAAATCAGCTGTA CTTCTATTATGAAGAAACAAAAGGGTTAAGCTGCAAAGGCATACGATGTGAAAAGCAGAA TAATGCATTTTCAACGTTATTTGAGACACTCCAGTCCCTGTTTTGGTCAATATTTGGGCT CATCAACTTATATGTGACCAATGTCAAGGCACAGCATGAATTCACTGAGTTTGTTGGTGC CACCATGTTTGGGACATACAATGTCATCTCTCTGGTTGTCCTACTCAACATGTTAATAGC TATGATGAATAATTCTTACCAACTTATTGCTGATCATGCAGACATAGAATGGAAATTTGC TCGAACAAAGCTTTGGATGAGTTATTTTGAAGAAGGCGGTACCTTGCCTACTCCCTTCAA TGTCATTCCGAGCCCCAAGTCTCTCTGGTACCTGATCAAATGGATATGGACACACTTGTG CAAGAAAAAGATGAGAAGAAAGCCGGAAAGCTTTGGAACAATTGGGAGGCGAGCTGCTGA TAATCTGAGAAGACACCACCAATATCAAGAAGTCATGAGGAACCTGGTCAAGCGATATGT GGCCGCTATGATCAGAGACGCCAAAACTGAAGAAGGCCTGACTGAGGAGAACTTTAAGGA ACTGAAGCAGGACATTTCGAGCTTCCGCTTTGAAGTCCTGGGGTTGCTGAGAGGTAGCAA GCTTTCTACTGTACAGTCTGCTCAGGGCACAAAGGAGTCCTCTAACTCAGTGGACTCGGA TGAAAAGAGTGATAACGAAGGCGGCAGCAAGGACAGGAAAAAGAACTTCAGCCTTTTCGA CTTGACCACCCTGATTCACCCGCGATCTGCAGCTATTGCTTCCGAGAGACATAACATCAG CAACGGGTCTGCCCTGTTGATGCANGAACCCCCGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTACAGTGCTCTTAACCCACGAGAATCCTGGGACATGTGGCATCCCACGCTGGTGGCCGA AGCTTTATTTGCTATCGCAAACATATTCAGTTCCCTGCGCCTGATCTCACTGTTCACGGC CAATTCTCACCTGGGGCCTCTGCAGATATCTCTGGGAAGGATGCTCCTGGACATTCTCAA GTTTCTATTCATCTACTGCCTCGTGCTGCTAGCATTTGCAAATGGCCTAAATCAGCTGTA CTTCTATTATGAAGAAACAAAAGGGTTAAGCTGCAAAGGCATACGATGTGAAAAGCAGAA TAATGCATTTTCAACGTTATTTGAGACACTCCAGTCCCTGTTTTGGTCAATATTTGGGCT CATCAACTTATATGTGACCAATGTCAAGGCACAGCATGAATTCACTGAGTTTGTTGGTGC CACCATGTTTGGGACATACAATGTCATCTCTCTGGTTGTCCTACTCAACATGTTAATAGC TATGATGAATAATTCTTACCAACTTATTGCTGATCATGCAGACATAGAATGGAAATTTGC TCGAACAAAGCTTTGGATGAGTTATTTTGAAGAAGGCGGTACCTTGCCTACTCCCTTCAA TGTCATTCCGAGCCCCAAGTCTCTCTGGTACCTGATCAAATGGATATGGACACACTTGTG CAAGAAAAAGATGAGAAGAAAGCCGGAAAGCTTTGGAACAATTGGGAGGCGAGCTGCTGA TAATCTGAGAAGACACCACCAATATCAAGAAGTCATGAGGAACCTGGTCAAGCGATATGT GGCCGCTATGATCAGAGACGCCAAAACTGAAGAAGGCCTGACTGAGGAGAACTTTAAGGA ACTGAAGCAGGACATTTCGAGCTTCCGCTTTGAAGTCCTGGGGTTGCTGAGAGGTAGCAA GCTTTCTACTGTACAGTCTGCTCAGGGCACAAAGGAGTCCTCTAACTCAGTGGACTCGGA TGAAAAGAGTGATAACGAAGGCGGCAGCAAGGACAGGAAAAAGAACTTCAGCCTTTTCGA CTTGACCACCCTGATTCACCCGCGATCTGCAGCTATTGCTTCCGAGAGACATAACATCAG CAACGGGTCTGCCCTGTTGATGCANGAACCCCCGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.612614 | |
| 40-159, - strand, RNAz p=0.607527 | |
| 200-317, + strand, RNAz p=0.646859 | |
| 956-1075, - strand, RNAz p=0.55107 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.612614 | |
| 40-159, - strand, RNAz p=0.607527 | |
| 200-317, + strand, RNAz p=0.646859 | |
| 956-1075, - strand, RNAz p=0.55107 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF421360, + | |
| 5' of AF421361, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-317, gnl|bosTau2|chr12 (12804131-12804447) | |
| 1-317, gnl|canFam2|chr25 (6090135-6089791) | |
| 1-317, gnl|danRer3|chr10 (18573646-18573304) | |
| 1-317, gnl|dasNov1|scaffold_2171 (82359-82016) | |
| 1-317, gnl|echTel1|scaffold_314058 (11283-10939) | |
| 1-317, gnl|fr1|chrUn (142911171-142910827) | |
| 1-317, gnl|galGal2|chr1 (164011560-164011228) | |
| 1-317, gnl|hg17|chr13 (37135540-37135884) | |
| 1-317, gnl|Hg17|chr13 (37135867-37135551) | |
| 1-317, gnl|loxAfr1|scaffold_28205 (30911-31255) | |
| 1-317, gnl|mm7|chr3 (54420568-54420233) | |
| 1-317, gnl|Mm7|chr3 (54420239-54420555) | |
| 1-317, gnl|monDom2|scaffold_15 (49939823-49940167) | |
| 1-317, gnl|oryCun1|scaffold_203595 (4728-4393) | |
| 1-317, gnl|panTro1|chr14 (36524108-36524452) | |
| 1-317, gnl|rheMac2|chr17 (16869486-16869828) | |
| 1-317, gnl|rn3|chr2 (143411796-143411461) | |
| 1-317, gnl|tetNig1|chr16 (4898458-4898798) | |
| 1-317, gnl|xenTro1|scaffold_570 (54298-53963) | |
| 512-706, gnl|bosTau2|chr12 (12814977-12815171) | |
| 512-706, gnl|Hg17|chr13 (37123596-37123402) | |
| 512-706, gnl|Mm7|chr3 (54431309-54431503) | |
| 837-1116, gnl|bosTau2|chr12 (12826646-12826925) | |
| 837-1116, gnl|Hg17|chr13 (37109764-37109485) | |
| 837-1116, gnl|Mm7|chr3 (54446650-54446917) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-317, gnl|bosTau2|chr12 (12804131-12804447) | |
| 1-317, gnl|canFam2|chr25 (6090135-6089791) | |
| 1-317, gnl|danRer3|chr10 (18573646-18573304) | |
| 1-317, gnl|dasNov1|scaffold_2171 (82359-82016) | |
| 1-317, gnl|echTel1|scaffold_314058 (11283-10939) | |
| 1-317, gnl|fr1|chrUn (142911171-142910827) | |
| 1-317, gnl|galGal2|chr1 (164011560-164011228) | |
| 1-317, gnl|hg17|chr13 (37135540-37135884) | |
| 1-317, gnl|Hg17|chr13 (37135867-37135551) | |
| 1-317, gnl|loxAfr1|scaffold_28205 (30911-31255) | |
| 1-317, gnl|mm7|chr3 (54420568-54420233) | |
| 1-317, gnl|Mm7|chr3 (54420239-54420555) | |
| 1-317, gnl|monDom2|scaffold_15 (49939823-49940167) | |
| 1-317, gnl|oryCun1|scaffold_203595 (4728-4393) | |
| 1-317, gnl|panTro1|chr14 (36524108-36524452) | |
| 1-317, gnl|rheMac2|chr17 (16869486-16869828) | |
| 1-317, gnl|rn3|chr2 (143411796-143411461) | |
| 1-317, gnl|tetNig1|chr16 (4898458-4898798) | |
| 1-317, gnl|xenTro1|scaffold_570 (54298-53963) | |
| 512-706, gnl|bosTau2|chr12 (12814977-12815171) | |
| 512-706, gnl|Hg17|chr13 (37123596-37123402) | |
| 512-706, gnl|Mm7|chr3 (54431309-54431503) | |
| 837-1116, gnl|bosTau2|chr12 (12826646-12826925) | |
| 837-1116, gnl|Hg17|chr13 (37109764-37109485) | |
| 837-1116, gnl|Mm7|chr3 (54446650-54446917) |