Ss1.1-Pig4-TMW8034K11.5
|
CACTTTCGCTGGGGACTGTGGGTGAGTCAGAAGGGCCGCTCTCTCTGCCTGTGTCCTGAG
AGACAGCATGAGAGTCAGCTGTATGGTAATAGCCACGGGGGAGGGGGAGCCCTCCCTAAC
AGACCCAGATGCTTGAGACCCTGGAAGCCTGTCTGCTCTCCAATCCTCTTAACCTAGACT
CAGCAAGGTCACTCCGAGTGACTCTGAGGCCTGTCTGGAGCCACCTGGCCCAGCCTCCCT
TTCATTGTGCCCGCCAGCTCCTCTGCAGGCACCGGGTATGGACCCAGGGCCTTGCCCACC
TGTGACTCAGCAGAGTGCCCCAAAGGGACCCTCATGTCACAGCCCTTTCTTACCCTCTCC
GGAGATGCCCTTGAGAGCAGAGGTGTTTGCGGGGCAAGATGGAGATGGCATCTGTGTGAG
AGAGCCACAGGCTGCTGTGTGTCCTGGAGGCCAGGACTTCTTGTGCGTCTGACAGCTCGG
ACCTTAGCAGAATTGCAAAAGTTAGAAACATTTGGCCTTGGTGCCTCCGGCCTTCTGGTT
TTCAGGGGAAGCAGGGTGGGAAGGGGCTATTTTTCCCATCAGAGCTCCTTTAGTGCGTGT
TTTAGAAGGGAGTTTCAAGGCATCCACTCTTGCCTTGATTCTAAAATGCACACTTTTAAC
TATGCACCCTTTTCTTCCTATGGAAAATTAAGATGTTCGACCCTGGGCCCTTCTGAGTCC
AGTCCTCTGTGCTCTAGTGCCCTTGATCCAAAATGTCCACTCTCCACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACTTTCGCTGGGGACTGTGGGTGAGTCAGAAGGGCCGCTCTCTCTGCCTGTGTCCTGAG
AGACAGCATGAGAGTCAGCTGTATGGTAATAGCCACGGGGGAGGGGGAGCCCTCCCTAAC
AGACCCAGATGCTTGAGACCCTGGAAGCCTGTCTGCTCTCCAATCCTCTTAACCTAGACT
CAGCAAGGTCACTCCGAGTGACTCTGAGGCCTGTCTGGAGCCACCTGGCCCAGCCTCCCT
TTCATTGTGCCCGCCAGCTCCTCTGCAGGCACCGGGTATGGACCCAGGGCCTTGCCCACC
TGTGACTCAGCAGAGTGCCCCAAAGGGACCCTCATGTCACAGCCCTTTCTTACCCTCTCC
GGAGATGCCCTTGAGAGCAGAGGTGTTTGCGGGGCAAGATGGAGATGGCATCTGTGTGAG
AGAGCCACAGGCTGCTGTGTGTCCTGGAGGCCAGGACTTCTTGTGCGTCTGACAGCTCGG
ACCTTAGCAGAATTGCAAAAGTTAGAAACATTTGGCCTTGGTGCCTCCGGCCTTCTGGTT
TTCAGGGGAAGCAGGGTGGGAAGGGGCTATTTTTCCCATCAGAGCTCCTTTAGTGCGTGT
TTTAGAAGGGAGTTTCAAGGCATCCACTCTTGCCTTGATTCTAAAATGCACACTTTTAAC
TATGCACCCTTTTCTTCCTATGGAAAATTAAGATGTTCGACCCTGGGCCCTTCTGAGTCC
AGTCCTCTGTGCTCTAGTGCCCTTGATCCAAAATGTCCACTCTCCACC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-268, gnl|bosTau2|chr2 (71845618-71845353) |
|
1-268, gnl|Hg17|chr1 (33477123-33476836) |
|
1-268, gnl|Mm7|chr4 (128179064-128179395) |
| |
|
448-605, gnl|bosTau2|chr2 (71845244-71845078) |
|
448-605, gnl|canFam2|chr2 (70983839-70983630) |
|
448-605, gnl|dasNov1|scaffold_24430 (51158-51377) |
|
448-605, gnl|hg17|chr1 (33476489-33476690) |
|
448-605, gnl|Hg17|chr1 (33476646-33476488) |
|
448-605, gnl|mm7|chr4 (128179627-128179458) |
|
448-605, gnl|Mm7|chr4 (128179483-128179627) |
|
448-605, gnl|oryCun1|scaffold_94308 (16886-17087) |
|
448-605, gnl|panTro1|chr1 (34214827-34215028) |
|
448-605, gnl|rheMac2|chr1 (36126064-36126278) |
|
448-605, gnl|rn3|chr5 (147972146-147971930) |
| |
|
619-766, gnl|bosTau2|chr2 (71844830-71844685) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-268, gnl|bosTau2|chr2 (71845618-71845353) |
|
1-268, gnl|Hg17|chr1 (33477123-33476836) |
|
1-268, gnl|Mm7|chr4 (128179064-128179395) |
| |
|
448-605, gnl|bosTau2|chr2 (71845244-71845078) |
|
448-605, gnl|canFam2|chr2 (70983839-70983630) |
|
448-605, gnl|dasNov1|scaffold_24430 (51158-51377) |
|
448-605, gnl|hg17|chr1 (33476489-33476690) |
|
448-605, gnl|Hg17|chr1 (33476646-33476488) |
|
448-605, gnl|mm7|chr4 (128179627-128179458) |
|
448-605, gnl|Mm7|chr4 (128179483-128179627) |
|
448-605, gnl|oryCun1|scaffold_94308 (16886-17087) |
|
448-605, gnl|panTro1|chr1 (34214827-34215028) |
|
448-605, gnl|rheMac2|chr1 (36126064-36126278) |
|
448-605, gnl|rn3|chr5 (147972146-147971930) |
| |
|
619-766, gnl|bosTau2|chr2 (71844830-71844685) |
