Non-Coding RNA Search

Ss1.1-Pig4-TMW8034P06.5

Sequence:


               
               GTGAGTAGCTGGGGATCCACAGTCACAGGCTCAAAGCGCCGCGCGCCCGGAGTGCCCGCA
GGGCGTGGGGCAGTTCCAAGCCCAGGGAGCCACCCTATTTCCGGTGTGGATTTGGGCTCT
GGAAGGATGCGGGCCGGTTCCAACTAAGAGTCTGAATCTGGGGACCGAGCAGGCTGTGGG
GAGAAAGCCAGAGCAGACCCGCCCTCTTGTGTGTCTCAGTCGGGACGAAGGCCCCCAGAT
AGCTCTGCTTCACGGCTGGGGGTAGGGTGGCGGGTGGCAGCCCCCGGGATTCCATAGCTG
CCCACAGCCTTCCTCTCTTCCCCGACCTCTAAGGCGACCCCTGTGACAGGAAGCTGTCCA
GAAGCCGCTACCCCTGTAGAGGCGAGAGGGGGAGAGGGAGTGGGTAGAAGGTAAAGACAA
GCGTCTTTTTAACTGTGGGAAGGGACAGTGGGAGTGACCTCCCCTCTCTTCTCGGCTTGA
CAGGAAGCATGGCACTTTGGCGGGCATACCAGAGGGCTCTGACTGCTCACCCATGGAAAG
TACAGGTCTTGACTGCTGGTGAGTGTCCCCGTGGGACCTGGTGGTACCACAGCAAATGAT
TTGGGAGGCAGAAGTCCCCTCCACCACAGCCCTCTTGAAGGATTGGCTCTCACCCCAGTC
TATTTTAGAGGGGTGTCCCCAGGCTGTTCTTAAGGAAAGGGGTGTGCATAGGTAGCCTAG
CTGTAAAGTAAGATCTGAAAGTCCTTAAAAACCTAAGGAGTCATCCCTTTAGGATAAAAG
CATTGCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGTAGCTGGGGATCCACAGTCACAGGCTCAAAGCGCCGCGCGCCCGGAGTGCCCGCA
GGGCGTGGGGCAGTTCCAAGCCCAGGGAGCCACCCTATTTCCGGTGTGGATTTGGGCTCT
GGAAGGATGCGGGCCGGTTCCAACTAAGAGTCTGAATCTGGGGACCGAGCAGGCTGTGGG
GAGAAAGCCAGAGCAGACCCGCCCTCTTGTGTGTCTCAGTCGGGACGAAGGCCCCCAGAT
AGCTCTGCTTCACGGCTGGGGGTAGGGTGGCGGGTGGCAGCCCCCGGGATTCCATAGCTG
CCCACAGCCTTCCTCTCTTCCCCGACCTCTAAGGCGACCCCTGTGACAGGAAGCTGTCCA
GAAGCCGCTACCCCTGTAGAGGCGAGAGGGGGAGAGGGAGTGGGTAGAAGGTAAAGACAA
GCGTCTTTTTAACTGTGGGAAGGGACAGTGGGAGTGACCTCCCCTCTCTTCTCGGCTTGA
CAGGAAGCATGGCACTTTGGCGGGCATACCAGAGGGCTCTGACTGCTCACCCATGGAAAG
TACAGGTCTTGACTGCTGGTGAGTGTCCCCGTGGGACCTGGTGGTACCACAGCAAATGAT
TTGGGAGGCAGAAGTCCCCTCCACCACAGCCCTCTTGAAGGATTGGCTCTCACCCCAGTC
TATTTTAGAGGGGTGTCCCCAGGCTGTTCTTAAGGAAAGGGGTGTGCATAGGTAGCCTAG
CTGTAAAGTAAGATCTGAAAGTCCTTAAAAACCTAAGGAGTCATCCCTTTAGGATAAAAG
CATTGCCCCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-405, + strand, RNAz p=0.993624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-405, + strand, RNAz p=0.993624

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002437, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002437, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-634, gnl|bosTau2|chr11 (52013727-52014213)
               

               
               115-634, gnl|Hg17|chr2 (27457420-27456891)
               

               
               115-634, gnl|Mm7|chr5 (30186564-30186102)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-634, gnl|bosTau2|chr11 (52013727-52014213)
               

               
               115-634, gnl|Hg17|chr2 (27457420-27456891)
               

               
               115-634, gnl|Mm7|chr5 (30186564-30186102)

	115-634, gnl\|bosTau2\|chr11 (52013727-52014213)
	115-634, gnl\|Hg17\|chr2 (27457420-27456891)
	115-634, gnl\|Mm7\|chr5 (30186564-30186102)