Non-Coding RNA Search

Ss1.1-Pig4-TMW8035A14.3

Sequence:


               
               GGCGGGGGCCGCAGGAAAGCAGGGCAGGAGTGGGGAAGCATGGCACAGTGGGGGAATCAG
GCTGGGTTCAAGGCTTGGCCCCCCGCTGTTGGATTTTATGGCTCTGAAACTTGAGCAAAT
GACATAATTTCTCTGGGCCACTGAAGAAGGAGGCAAGAGTCCAAGCAACCATGTGTGCAA
AGAGCCTGGCCAGGGTGGGCCACAGAGCCTGCTCCTGAGGGCAGAGTGCCAGACATAAGC
TCCCTCAGGACAGAGGCCTCACCTTCACTCCTCAGCGCCCAGACCCAAGCCTGGTTCACG
ATGTGCTCAGTAATGGTTTGGGTGCCCTTTCAATCCGGCTGAGCCTGTATCTTCCTGTGT
GACGGTGGGAGGGGATCAGACGCCTTCCCTGAGATGCTGCCAGGAGTATAGAGAATGTAG
GTAAGAACTCCTTGTGTGCCCTCAGCCATAGGTGTGAAGGAAACAGTGCCCACTTTTGTC
AGCTATGTGGTCTCAGCCGTGTTGCTTCACTTTACTGATCCTATTTTCTCATCTATAGAC
AGGGTTCTCAAAAGGCTGCACAGGAGGTGCTTAGCATGGTTCCTGGCACATAGTAAGTGC
TGGGCACTTGGTAGTCGTTGCTTTTGTTGTGAATGCTCATCATGATTTTTTCCAATTATT
ATGATTGCTATTGGTAATCAAAAATGAAACTAACAATTGGAGCTCCCACTGTGGTGCAAC
GGGATCAGAGGTGTCTTCAGAGCACTGGGACTCGGGTGCGATCCCCAGCCCAGCATAGCG
GGTTAAGGATGCAGTATTACTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGGGCCGCAGGAAAGCAGGGCAGGAGTGGGGAAGCATGGCACAGTGGGGGAATCAG
GCTGGGTTCAAGGCTTGGCCCCCCGCTGTTGGATTTTATGGCTCTGAAACTTGAGCAAAT
GACATAATTTCTCTGGGCCACTGAAGAAGGAGGCAAGAGTCCAAGCAACCATGTGTGCAA
AGAGCCTGGCCAGGGTGGGCCACAGAGCCTGCTCCTGAGGGCAGAGTGCCAGACATAAGC
TCCCTCAGGACAGAGGCCTCACCTTCACTCCTCAGCGCCCAGACCCAAGCCTGGTTCACG
ATGTGCTCAGTAATGGTTTGGGTGCCCTTTCAATCCGGCTGAGCCTGTATCTTCCTGTGT
GACGGTGGGAGGGGATCAGACGCCTTCCCTGAGATGCTGCCAGGAGTATAGAGAATGTAG
GTAAGAACTCCTTGTGTGCCCTCAGCCATAGGTGTGAAGGAAACAGTGCCCACTTTTGTC
AGCTATGTGGTCTCAGCCGTGTTGCTTCACTTTACTGATCCTATTTTCTCATCTATAGAC
AGGGTTCTCAAAAGGCTGCACAGGAGGTGCTTAGCATGGTTCCTGGCACATAGTAAGTGC
TGGGCACTTGGTAGTCGTTGCTTTTGTTGTGAATGCTCATCATGATTTTTTCCAATTATT
ATGATTGCTATTGGTAATCAAAAATGAAACTAACAATTGGAGCTCCCACTGTGGTGCAAC
GGGATCAGAGGTGTCTTCAGAGCACTGGGACTCGGGTGCGATCCCCAGCCCAGCATAGCG
GGTTAAGGATGCAGTATTACTGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               561-679, - strand, RNAz p=0.607612

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               561-679, - strand, RNAz p=0.607612

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-695, gnl|bosTau2|chr7 (7633005-7633706)
               

               
               1-695, gnl|canFam2|chr20 (51366103-51365535)
               

               
               1-695, gnl|hg17|chr19 (14140450-14141012)
               

               
               1-695, gnl|Hg17|chr19 (14141257-14140563)
               

               
               1-695, gnl|loxAfr1|scaffold_155579 (4399-4949)
               

               
               1-695, gnl|mm7|chr8 (82503356-82502855)
               

               
               1-695, gnl|Mm7|chr8 (82502630-82503259)
               

               
               1-695, gnl|panTro1|chr20 (14775867-14776430)
               

               
               1-695, gnl|rheMac2|chr19 (13858771-13859320)
               

               
               1-695, gnl|rn3|chr19 (25911867-25912372)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr7 (7633005-7633706)
               

               
               1-695, gnl|canFam2|chr20 (51366103-51365535)
               

               
               1-695, gnl|hg17|chr19 (14140450-14141012)
               

               
               1-695, gnl|Hg17|chr19 (14141257-14140563)
               

               
               1-695, gnl|loxAfr1|scaffold_155579 (4399-4949)
               

               
               1-695, gnl|mm7|chr8 (82503356-82502855)
               

               
               1-695, gnl|Mm7|chr8 (82502630-82503259)
               

               
               1-695, gnl|panTro1|chr20 (14775867-14776430)
               

               
               1-695, gnl|rheMac2|chr19 (13858771-13859320)
               

               
               1-695, gnl|rn3|chr19 (25911867-25912372)

	1-695, gnl\|bosTau2\|chr7 (7633005-7633706)
	1-695, gnl\|canFam2\|chr20 (51366103-51365535)
	1-695, gnl\|hg17\|chr19 (14140450-14141012)
	1-695, gnl\|Hg17\|chr19 (14141257-14140563)
	1-695, gnl\|loxAfr1\|scaffold_155579 (4399-4949)
	1-695, gnl\|mm7\|chr8 (82503356-82502855)
	1-695, gnl\|Mm7\|chr8 (82502630-82503259)
	1-695, gnl\|panTro1\|chr20 (14775867-14776430)
	1-695, gnl\|rheMac2\|chr19 (13858771-13859320)
	1-695, gnl\|rn3\|chr19 (25911867-25912372)