Non-Coding RNA Search

Ss1.1-Pig4-TMW8035B03.5

Sequence:


               
               ATTAAAATCAATATCCTGATCCTGTCATCTCAAGTATTCACTATCCTCCCCCCCCCCAGA
TATTGTCACTTACAAACCTCATCAGCATGGTTTCCATATCTCCACTTAAGTTGTTGGATA
TAAATGATGACGCTCCTAAGGCTAGAAGAACCCCATGGTGTATGCTATTACAAAGCTGTA
TCTAGCATGATAGCGACCTGGTAATCTGCATGCTTTGGGAATGGTCTTTCAAGCAATTAT
TAATCTAACAAAAATTAACAGCCAACTCCCATTTCTCAATTTTGTACTTAGGGATCTCAT
GAAAGATTTCGTCAAATGCCTTGCTAAAGTCTAGATATACTATGTCTACCATATATCTCA
TAGCTACCAGCTTAGTAACAGTACAAAAAAAGAAATAAGGATTAGCCTAAATTGACTTTT
TCTTAAGTGAATTCAAGCTGGCTTGTAGTGCTTATTCTTCCGTTTCTAGGTTCTTGCAAG
CCATCCCTGTAATAATCTAGAAGACTTACATCAAACCTACTGGTCTGTAATTTATGGAAT
TAACTTTTACCTCTTTTTTTCAAAAATTGAAATTACATCTGCCCAGTCTTCTGGAACATC
CTTCTCTGTGATCCCTCAAATATCACTGACACAGCCTTAGCGTTCTCGTTTGAAATTACT
CTCAGTTCCCTCAGCTATAATTTATCTGGTCCAAGATATTTGAACTCTTATTAAAGTAGT
TGAATTCTCGCTGACTACCTCTTTACTCATACTGGGCTTCAGTTCCCAAGAGGGAACTGA
GAAGGCAGAAGCAGAAATAGTAATTGAGGAATTTTACCTCTTTGTCATTTATCATTATTA
CACTGCTGGCTTAGGGCAGAGACCTATTTCTTCCTCATTCAGGCTTTTTGTTCTGAATAT
ATTTAAAAATGCCCTTTTTGTTCAATGTTTTTACTTTGAGATTTAGCCTTCTTAAGGCTA
TTTTTAAAAGTTTTTGTGCCTCCTTTATCTTTTTTTAGGTGTACAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAATCAATATCCTGATCCTGTCATCTCAAGTATTCACTATCCTCCCCCCCCCCAGA
TATTGTCACTTACAAACCTCATCAGCATGGTTTCCATATCTCCACTTAAGTTGTTGGATA
TAAATGATGACGCTCCTAAGGCTAGAAGAACCCCATGGTGTATGCTATTACAAAGCTGTA
TCTAGCATGATAGCGACCTGGTAATCTGCATGCTTTGGGAATGGTCTTTCAAGCAATTAT
TAATCTAACAAAAATTAACAGCCAACTCCCATTTCTCAATTTTGTACTTAGGGATCTCAT
GAAAGATTTCGTCAAATGCCTTGCTAAAGTCTAGATATACTATGTCTACCATATATCTCA
TAGCTACCAGCTTAGTAACAGTACAAAAAAAGAAATAAGGATTAGCCTAAATTGACTTTT
TCTTAAGTGAATTCAAGCTGGCTTGTAGTGCTTATTCTTCCGTTTCTAGGTTCTTGCAAG
CCATCCCTGTAATAATCTAGAAGACTTACATCAAACCTACTGGTCTGTAATTTATGGAAT
TAACTTTTACCTCTTTTTTTCAAAAATTGAAATTACATCTGCCCAGTCTTCTGGAACATC
CTTCTCTGTGATCCCTCAAATATCACTGACACAGCCTTAGCGTTCTCGTTTGAAATTACT
CTCAGTTCCCTCAGCTATAATTTATCTGGTCCAAGATATTTGAACTCTTATTAAAGTAGT
TGAATTCTCGCTGACTACCTCTTTACTCATACTGGGCTTCAGTTCCCAAGAGGGAACTGA
GAAGGCAGAAGCAGAAATAGTAATTGAGGAATTTTACCTCTTTGTCATTTATCATTATTA
CACTGCTGGCTTAGGGCAGAGACCTATTTCTTCCTCATTCAGGCTTTTTGTTCTGAATAT
ATTTAAAAATGCCCTTTTTGTTCAATGTTTTTACTTTGAGATTTAGCCTTCTTAAGGCTA
TTTTTAAAAGTTTTTGTGCCTCCTTTATCTTTTTTTAGGTGTACAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               677-876, + strand, RNAz p=0.871698

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               677-876, + strand, RNAz p=0.871698

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               781-938, + strand, RNAmicro p=0.932707

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               781-938, + strand, RNAmicro p=0.932707

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1005, gnl|bosTau2|chrX (20592701-20591677)
               

               
               1-1005, gnl|Hg17|chrX (69305550-69306547)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1005, gnl|bosTau2|chrX (20592701-20591677)
               

               
               1-1005, gnl|Hg17|chrX (69305550-69306547)

	1-1005, gnl\|bosTau2\|chrX (20592701-20591677)
	1-1005, gnl\|Hg17\|chrX (69305550-69306547)