Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F03.5

Sequence:


               
               CGAGCGGCCGCCCGGGCAGGTACTDTTTTGGAATGGCCAGTTCCATCTGGTGGGTTATTC
TAACACTCACTTGGTTTTTGGCAGCGGGACTCAAGTGGGGTCATGAAGCCATAGAAATGC
ACAGCTCTTATTTCCACATTGCAGCCTGGGCCATCCCTGCAGTGAAAACCATTGTCATCT
TGATTATGAGACTGGTGGATGCGGATGAACTGACGGGCCTGTGCTACGTGGGGAACCAGA
CCTCGATGCCCTCACGGGCTTTGTGGTGGCGCCCCTCTTCACTTACCTGGTGATCGGAAC
TTTGTTCATTGCTGCGGGCTTGGTGGCCTTGTTCAAGATCCGGTCGAACCTTCAGAAGGA
CGGGACAAAGACAGACAAGTTGGAAAGGCTGATGGTCAAGATTGGGGTCTTCTCAGTCCT
GTACACGGTGCCCGCAACCTGTGTGATCGCCTGTTATTTCTATGAAATCTCCAACTGGGC
GCTCTTCCGGTTTTCTGCAGACGACTCCAATATGGCGGTTGAAATGTTAAAAATTTTTAT
GTCGCTGCTGGTAGGCATCACTTCAGGCATGTGGATTTGGTCTGCCAAAACTCTGCACAC
GTGGCAGAAGTGTTCCAACAGATTGGTGAATTCTGGGAAGGTAAAGAGAGAAAAGCGAGG
GAATGGTTGGGTGAAGCCTGGGAGAGGCAGCGAAACTGTGGTATAAGGCTAGCTAGCCTC
CACGCTTTCCAGATTTTGAAGGGGGAATGCCAGCATTTCAGATAGCAAAGCAATCTATAA
ACACTGGAAACCCTGGGTTCAGAGAAGTGTTACAAGAGTTTTATAGTTTGGCTGATCTAA
CCCCCTCCGCCAACCCACAACCCACCGCTACTCTCCCTCCCCTCTCCCCCCAGCATCATA
AAACAGATGATTTTGCTGCAAACTTTTGGAATGATCCAAAATGGAAAAGCCAGTTAGAGG
CTTTCAAAGCTGTGAAAAATCAAAACATTGATCACTTTAGCAGGTCGCAGCTTGGAGCGT
GGAGGTCCCGCCTAGATTCCAGGAGGTCCAGGGCGATGCTGCTTTTCCCTGCAGGATGGG
ATTTGAGCTGTGAGTAGACAACTTGCAGGGAGAAAGATTAACTTTTTTAACCCTTTAAAA
ATTTAAATACTAACTGGGTCTTTCAGATAGCAAAGCAATCTATAAACACTGGAAACCCTG
GGTTCAGAGAAGTGTTACAAGAGTTTTATAGTTTGGCTGATCTAACATAAACATTATAAG
CGGTGCACTATCTGCTGTTTAGAACTCTGGATTGCTCTCCCAAGAGGTGGTGTCAGAATC
TTTCAGTGCCTTTGTCATAAAACAGAATTGTTTGAACAAACAAAAGTACTGTACAAACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCGGCCGCCCGGGCAGGTACTDTTTTGGAATGGCCAGTTCCATCTGGTGGGTTATTC
TAACACTCACTTGGTTTTTGGCAGCGGGACTCAAGTGGGGTCATGAAGCCATAGAAATGC
ACAGCTCTTATTTCCACATTGCAGCCTGGGCCATCCCTGCAGTGAAAACCATTGTCATCT
TGATTATGAGACTGGTGGATGCGGATGAACTGACGGGCCTGTGCTACGTGGGGAACCAGA
CCTCGATGCCCTCACGGGCTTTGTGGTGGCGCCCCTCTTCACTTACCTGGTGATCGGAAC
TTTGTTCATTGCTGCGGGCTTGGTGGCCTTGTTCAAGATCCGGTCGAACCTTCAGAAGGA
CGGGACAAAGACAGACAAGTTGGAAAGGCTGATGGTCAAGATTGGGGTCTTCTCAGTCCT
GTACACGGTGCCCGCAACCTGTGTGATCGCCTGTTATTTCTATGAAATCTCCAACTGGGC
GCTCTTCCGGTTTTCTGCAGACGACTCCAATATGGCGGTTGAAATGTTAAAAATTTTTAT
GTCGCTGCTGGTAGGCATCACTTCAGGCATGTGGATTTGGTCTGCCAAAACTCTGCACAC
GTGGCAGAAGTGTTCCAACAGATTGGTGAATTCTGGGAAGGTAAAGAGAGAAAAGCGAGG
GAATGGTTGGGTGAAGCCTGGGAGAGGCAGCGAAACTGTGGTATAAGGCTAGCTAGCCTC
CACGCTTTCCAGATTTTGAAGGGGGAATGCCAGCATTTCAGATAGCAAAGCAATCTATAA
ACACTGGAAACCCTGGGTTCAGAGAAGTGTTACAAGAGTTTTATAGTTTGGCTGATCTAA
CCCCCTCCGCCAACCCACAACCCACCGCTACTCTCCCTCCCCTCTCCCCCCAGCATCATA
AAACAGATGATTTTGCTGCAAACTTTTGGAATGATCCAAAATGGAAAAGCCAGTTAGAGG
CTTTCAAAGCTGTGAAAAATCAAAACATTGATCACTTTAGCAGGTCGCAGCTTGGAGCGT
GGAGGTCCCGCCTAGATTCCAGGAGGTCCAGGGCGATGCTGCTTTTCCCTGCAGGATGGG
ATTTGAGCTGTGAGTAGACAACTTGCAGGGAGAAAGATTAACTTTTTTAACCCTTTAAAA
ATTTAAATACTAACTGGGTCTTTCAGATAGCAAAGCAATCTATAAACACTGGAAACCCTG
GGTTCAGAGAAGTGTTACAAGAGTTTTATAGTTTGGCTGATCTAACATAAACATTATAAG
CGGTGCACTATCTGCTGTTTAGAACTCTGGATTGCTCTCCCAAGAGGTGGTGTCAGAATC
TTTCAGTGCCTTTGTCATAAAACAGAATTGTTTGAACAAACAAAAGTACTGTACAAACGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47183080|emb|CAG13927.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47183080|emb|CAG13927.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               578-777, + strand, RNAz p=0.854835
               

               
               897-1016, - strand, RNAz p=0.964908

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-777, + strand, RNAz p=0.854835
               

               
               897-1016, - strand, RNAz p=0.964908

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB054881, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB054881, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               20-1378, gnl|bosTau2|chr29 (4151448-4150109)
               

               
               20-1378, gnl|Hg17|chr11 (86340519-86339190)
               

               
               20-1378, gnl|Mm7|chr7 (85344737-85346033)
               


               
               21-465, gnl|bosTau2|chr13 (15026825-15026374)
               

               
               21-465, gnl|Hg17|chr10 (35969154-35968703)
               

               
               21-465, gnl|Mm7|chr18 (9417877-9418328)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-1378, gnl|bosTau2|chr29 (4151448-4150109)
               

               
               20-1378, gnl|Hg17|chr11 (86340519-86339190)
               

               
               20-1378, gnl|Mm7|chr7 (85344737-85346033)
               


               
               21-465, gnl|bosTau2|chr13 (15026825-15026374)
               

               
               21-465, gnl|Hg17|chr10 (35969154-35968703)
               

               
               21-465, gnl|Mm7|chr18 (9417877-9418328)

	578-777, + strand, RNAz p=0.854835
	897-1016, - strand, RNAz p=0.964908

	20-1378, gnl\|bosTau2\|chr29 (4151448-4150109)
	20-1378, gnl\|Hg17\|chr11 (86340519-86339190)
	20-1378, gnl\|Mm7\|chr7 (85344737-85346033)

	21-465, gnl\|bosTau2\|chr13 (15026825-15026374)
	21-465, gnl\|Hg17\|chr10 (35969154-35968703)
	21-465, gnl\|Mm7\|chr18 (9417877-9418328)