Non-Coding RNA Search

Ss1.1-Pig4-TMW8035F15.5

Sequence:


               
               GATTTCCGACGGGATGTCTGATCACCGCCCTCCTATGGGCTACCATGGCCAGGGACCCTC
AGACCATCACCGCTCTTTCCACACAGACAAACTGGGGGAGTATAAACAGCCCCTGCCCCC
CCTGCATCCCGCAGTCTCAGATCCTCGATCGCCCCCTTCTCAGAAATCTCCTCACGATTC
CAAGTCACCCCTGGATCATAGGTCTCCTTTGGAGAGATCACTAGAACAGAAAAACAACCC
AGATTATAACTGGAATGTTAGGAAAACATAAAGGACGGCTTGGAATGAAGGGGAGAGCAA
GAGTTGTTAAGCACCTGGATGTTTTTGGTCTGACCCAACAGGAGCCAGTTCTAGACCAGT
GAGTGGAGTTTCTGGACATGCTGCTCCTGTCAGCTCGCTGGCTAAGGAGCACTTCAAGGA
GCGGGAGGCCTTGCGCTCGGTCACTACTCCTTCACTTCGGCGCCCCATCCCATTCCGGCC
TGGTCCTGGCCCCCCCCTTTGACGGGTGCTAGGAGGAAGAGGTGACTGCGTGTGTGCCAG
CTTCACAGGCTCTTTCCCAGTGGAGGAAGAAGGGATCAGAGTCGTGAATGTTTTGTTGCC
AGGGTCACTGTGCCGGGCCCTTGGTGCGGTGGCCAGGGAAGGACATGTGCATGAAGGCTG
CCGGGACCTGCTGGACAGCTCAGGGTGTGGTTCACTCTGACGTGATGGATGCTGCTGACG
GGAGCAGGGCGTGGGAGAGCGGGTTGGGGTCTCGCATCATAGGACTTGAAGGGGAGCAGG
TCCCCCCCTCAAGTGTGTTCTTGGGAGAAATGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTCCGACGGGATGTCTGATCACCGCCCTCCTATGGGCTACCATGGCCAGGGACCCTC
AGACCATCACCGCTCTTTCCACACAGACAAACTGGGGGAGTATAAACAGCCCCTGCCCCC
CCTGCATCCCGCAGTCTCAGATCCTCGATCGCCCCCTTCTCAGAAATCTCCTCACGATTC
CAAGTCACCCCTGGATCATAGGTCTCCTTTGGAGAGATCACTAGAACAGAAAAACAACCC
AGATTATAACTGGAATGTTAGGAAAACATAAAGGACGGCTTGGAATGAAGGGGAGAGCAA
GAGTTGTTAAGCACCTGGATGTTTTTGGTCTGACCCAACAGGAGCCAGTTCTAGACCAGT
GAGTGGAGTTTCTGGACATGCTGCTCCTGTCAGCTCGCTGGCTAAGGAGCACTTCAAGGA
GCGGGAGGCCTTGCGCTCGGTCACTACTCCTTCACTTCGGCGCCCCATCCCATTCCGGCC
TGGTCCTGGCCCCCCCCTTTGACGGGTGCTAGGAGGAAGAGGTGACTGCGTGTGTGCCAG
CTTCACAGGCTCTTTCCCAGTGGAGGAAGAAGGGATCAGAGTCGTGAATGTTTTGTTGCC
AGGGTCACTGTGCCGGGCCCTTGGTGCGGTGGCCAGGGAAGGACATGTGCATGAAGGCTG
CCGGGACCTGCTGGACAGCTCAGGGTGTGGTTCACTCTGACGTGATGGATGCTGCTGACG
GGAGCAGGGCGTGGGAGAGCGGGTTGGGGTCTCGCATCATAGGACTTGAAGGGGAGCAGG
TCCCCCCCTCAAGTGTGTTCTTGGGAGAAATGACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-279, - strand, RNAz p=0.593132

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, - strand, RNAz p=0.593132

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-816, gnl|bosTau2|chr21 (8129873-8130684)
               

               
               1-816, gnl|Hg17|chr15 (91368670-91369518)
               

               
               1-816, gnl|Mm7|chr7 (69282691-69281906)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr21 (8129873-8130684)
               

               
               1-816, gnl|Hg17|chr15 (91368670-91369518)
               

               
               1-816, gnl|Mm7|chr7 (69282691-69281906)

	1-816, gnl\|bosTau2\|chr21 (8129873-8130684)
	1-816, gnl\|Hg17\|chr15 (91368670-91369518)
	1-816, gnl\|Mm7\|chr7 (69282691-69281906)