Ss1.1-Pig4-TMW8035F23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTTGCCGTTACCGCTATGTGCGGAGCGTGTGTGGAATAACGTTATTGCCCAGCGGCGC GGAGGGGCCAGGAGCTCGATCGCGGCGGCGGCGGCGACGACGAAGACGACGACGACGGGG TGGGGGAGGAAGCTGGCGAGAGACTCACGGGACGCGGCGCGCCCCGCCCCCCGGTCCGGT GCCTCTCAGCAGTGAGGGGATGACGTAGCCTTGCCAGAGACTTAGAAGCTAAGCAGAAAA TGAGCTTAACATCCTGGTTTTTGGTGAGCAGTGGAGGCACGCGCCACAGGCTGCCGCGAG AAATGATTTTTGTTGGAAGAGATGACTGTGAGCTCATGTTGCAGTCTCGTAGTGTGGATA AGCAACACGCTGTAATCAATTACGATGCCTCTGCTGATGAACATTTGGTGAAAGATTTGG GCAGCCTAAATGGGACTTTTGTGAATGATGTAAGGATTCCCGAACAGACTTACATCACCT TGAAACTTGAAGATAAGCTGAGATTTGGATATGATACAAATCTTTTCACTGTAGTTCGAG GAGAAATGAGGGTCCCTGAAGAAGCTCTAAAGCATGAGAAGTTTACCATTCAGCTTCAGT TGTCCCAAAAATCTTCAGAATCAGAGTCATCAAAATCTGCATGTGCCAAAAGCATAGATT CAAAGGTAGCAGATAGTGCCACAGAAGCACAGCACAAAACTACAGAAGCACTAAAGTCGG AGGAAAAAGCCATGGATACTTCTGCCATGCCCCGTGGTACTCCATTATATGGGCAGCCAT CCTGGTGGGGAGATGATGAGGTAGATGAAAAAAGGGCTTTCAAGTCCAATGGCAAACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTTGCCGTTACCGCTATGTGCGGAGCGTGTGTGGAATAACGTTATTGCCCAGCGGCGC GGAGGGGCCAGGAGCTCGATCGCGGCGGCGGCGGCGACGACGAAGACGACGACGACGGGG TGGGGGAGGAAGCTGGCGAGAGACTCACGGGACGCGGCGCGCCCCGCCCCCCGGTCCGGT GCCTCTCAGCAGTGAGGGGATGACGTAGCCTTGCCAGAGACTTAGAAGCTAAGCAGAAAA TGAGCTTAACATCCTGGTTTTTGGTGAGCAGTGGAGGCACGCGCCACAGGCTGCCGCGAG AAATGATTTTTGTTGGAAGAGATGACTGTGAGCTCATGTTGCAGTCTCGTAGTGTGGATA AGCAACACGCTGTAATCAATTACGATGCCTCTGCTGATGAACATTTGGTGAAAGATTTGG GCAGCCTAAATGGGACTTTTGTGAATGATGTAAGGATTCCCGAACAGACTTACATCACCT TGAAACTTGAAGATAAGCTGAGATTTGGATATGATACAAATCTTTTCACTGTAGTTCGAG GAGAAATGAGGGTCCCTGAAGAAGCTCTAAAGCATGAGAAGTTTACCATTCAGCTTCAGT TGTCCCAAAAATCTTCAGAATCAGAGTCATCAAAATCTGCATGTGCCAAAAGCATAGATT CAAAGGTAGCAGATAGTGCCACAGAAGCACAGCACAAAACTACAGAAGCACTAAAGTCGG AGGAAAAAGCCATGGATACTTCTGCCATGCCCCGTGGTACTCCATTATATGGGCAGCCAT CCTGGTGGGGAGATGATGAGGTAGATGAAAAAAGGGCTTTCAAGTCCAATGGCAAACCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 198-344, + strand, RNAz p=0.919901 | |
| 611-729, - strand, RNAz p=0.959553 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 198-344, + strand, RNAz p=0.919901 | |
| 611-729, - strand, RNAz p=0.959553 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AB022658, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 198-344, gnl|bosTau2|chr16 (23659677-23659531) | |
| 198-344, gnl|canFam2|chr7 (37335506-37335640) | |
| 198-344, gnl|canFam2|chr8 (75421019-75421134) | |
| 198-344, gnl|danRer3|chr13 (6314111-6313980) | |
| 198-344, gnl|danRer3|chrUn (24273942-24273833) | |
| 198-344, gnl|dasNov1|scaffold_3818 (14594-14702) | |
| 198-344, gnl|dasNov1|scaffold_3818 (14726-14595) | |
| 198-344, gnl|echTel1|scaffold_206087 (7142-7033) | |
| 198-344, gnl|echTel1|scaffold_206087 (7007-7141) | |
| 198-344, gnl|fr1|chrUn (60044702-60044588) | |
| 198-344, gnl|fr1|chrUn (257198397-257198267) | |
| 198-344, gnl|galGal2|chr3 (31528240-31528106) | |
| 198-344, gnl|hg17|chr1 (239714490-239714626) | |
| 198-344, gnl|Hg17|chr1 (239714665-239714519) | |
| 198-344, gnl|hg17|chr14 (104405829-104405945) | |
| 198-344, gnl|loxAfr1|scaffold_16679 (30168-30052) | |
| 198-344, gnl|loxAfr1|scaffold_16679 (30033-30167) | |
| 198-344, gnl|mm7|chr1 (176759762-176759894) | |
| 198-344, gnl|Mm7|chr1 (176759933-176759788) | |
| 198-344, gnl|mm7|chr12 (110249592-110249703) | |
| 198-344, gnl|monDom2|scaffold_13 (40657558-40657420) | |
| 198-344, gnl|oryCun1|scaffold_168057 (12195-12332) | |
| 198-344, gnl|oryCun1|scaffold_87212 (951-842) | |
| 198-344, gnl|panTro1|chr1 (223707170-223707306) | |
| 198-344, gnl|panTro1|chr15 (105097806-105097922) | |
| 198-344, gnl|rheMac2|chr1 (213882188-213882052) | |
| 198-344, gnl|rheMac2|chr7 (168245692-168245808) | |
| 198-344, gnl|rn3|chr13 (92753467-92753601) | |
| 198-344, gnl|rn3|chr6 (137716009-137716120) | |
| 198-344, gnl|tetNig1|chr10 (3842569-3842455) | |
| 198-344, gnl|tetNig1|chr17 (11069089-11069199) | |
| 198-344, gnl|xenTro1|scaffold_556 (534209-534074) | |
| 571-729, gnl|bosTau2|chr16 (23631547-23631389) | |
| 571-729, gnl|Hg17|chr1 (239690025-239689867) | |
| 571-729, gnl|Mm7|chr1 (176748695-176748540) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 198-344, gnl|bosTau2|chr16 (23659677-23659531) | |
| 198-344, gnl|canFam2|chr7 (37335506-37335640) | |
| 198-344, gnl|canFam2|chr8 (75421019-75421134) | |
| 198-344, gnl|danRer3|chr13 (6314111-6313980) | |
| 198-344, gnl|danRer3|chrUn (24273942-24273833) | |
| 198-344, gnl|dasNov1|scaffold_3818 (14594-14702) | |
| 198-344, gnl|dasNov1|scaffold_3818 (14726-14595) | |
| 198-344, gnl|echTel1|scaffold_206087 (7142-7033) | |
| 198-344, gnl|echTel1|scaffold_206087 (7007-7141) | |
| 198-344, gnl|fr1|chrUn (60044702-60044588) | |
| 198-344, gnl|fr1|chrUn (257198397-257198267) | |
| 198-344, gnl|galGal2|chr3 (31528240-31528106) | |
| 198-344, gnl|hg17|chr1 (239714490-239714626) | |
| 198-344, gnl|Hg17|chr1 (239714665-239714519) | |
| 198-344, gnl|hg17|chr14 (104405829-104405945) | |
| 198-344, gnl|loxAfr1|scaffold_16679 (30168-30052) | |
| 198-344, gnl|loxAfr1|scaffold_16679 (30033-30167) | |
| 198-344, gnl|mm7|chr1 (176759762-176759894) | |
| 198-344, gnl|Mm7|chr1 (176759933-176759788) | |
| 198-344, gnl|mm7|chr12 (110249592-110249703) | |
| 198-344, gnl|monDom2|scaffold_13 (40657558-40657420) | |
| 198-344, gnl|oryCun1|scaffold_168057 (12195-12332) | |
| 198-344, gnl|oryCun1|scaffold_87212 (951-842) | |
| 198-344, gnl|panTro1|chr1 (223707170-223707306) | |
| 198-344, gnl|panTro1|chr15 (105097806-105097922) | |
| 198-344, gnl|rheMac2|chr1 (213882188-213882052) | |
| 198-344, gnl|rheMac2|chr7 (168245692-168245808) | |
| 198-344, gnl|rn3|chr13 (92753467-92753601) | |
| 198-344, gnl|rn3|chr6 (137716009-137716120) | |
| 198-344, gnl|tetNig1|chr10 (3842569-3842455) | |
| 198-344, gnl|tetNig1|chr17 (11069089-11069199) | |
| 198-344, gnl|xenTro1|scaffold_556 (534209-534074) | |
| 571-729, gnl|bosTau2|chr16 (23631547-23631389) | |
| 571-729, gnl|Hg17|chr1 (239690025-239689867) | |
| 571-729, gnl|Mm7|chr1 (176748695-176748540) |