Ss1.1-Pig4-TMW8036C19.3
|
GGCCTGCACACCCGCAGCACCAGGGTGGCCTTTTGGGGGTGGGGAGCCTGTACTCAGCCA
CTTTCGGGGTCATTCGGTCTCATCTGCGTCCCATCCGCCTCCTCCACCGCCATCTTCAGG
TCCCTCCCCTTGGTGTTGCGCAGGGTGGGGTCCAAATGCTGAAGAGGGGGCCTTTCCTTA
CGTTTATCTGACTTCTCCTCCAGGAGCAGCAGGTAGATGGAGACCTGCTTCTTCGGCTCA
CGGAGGAAGAACTCCAGACTGACCTGGGCATGAAGTCCGGCATTACCCGCAAGAGATTTT
TTAGGGAGCTCACGGAGCTCAAGACCTTCGCGAACTATGCCACGTGCGACCGCAGTAACC
TGGCTGACTGGCTGGGCAGCCTGGACCCGCGCTTCCGCCAGTACACGTACGGCCTGGTCA
GCTGCGGCCTGGACCGCTCCCTGCTGCATCGGGTGTCAGAGCAGCAGCTCCTGGAGGACT
GCGGCATCCGCCTGGGCGTGCACCGCGTCCGCATCCTCACTGCGGCCAGAGGTCAGCCTG
CCCACCTGGGCCCCTACCTCTGTCCTAGTCCCGCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGCCTGCACACCCGCAGCACCAGGGTGGCCTTTTGGGGGTGGGGAGCCTGTACTCAGCCA
CTTTCGGGGTCATTCGGTCTCATCTGCGTCCCATCCGCCTCCTCCACCGCCATCTTCAGG
TCCCTCCCCTTGGTGTTGCGCAGGGTGGGGTCCAAATGCTGAAGAGGGGGCCTTTCCTTA
CGTTTATCTGACTTCTCCTCCAGGAGCAGCAGGTAGATGGAGACCTGCTTCTTCGGCTCA
CGGAGGAAGAACTCCAGACTGACCTGGGCATGAAGTCCGGCATTACCCGCAAGAGATTTT
TTAGGGAGCTCACGGAGCTCAAGACCTTCGCGAACTATGCCACGTGCGACCGCAGTAACC
TGGCTGACTGGCTGGGCAGCCTGGACCCGCGCTTCCGCCAGTACACGTACGGCCTGGTCA
GCTGCGGCCTGGACCGCTCCCTGCTGCATCGGGTGTCAGAGCAGCAGCTCCTGGAGGACT
GCGGCATCCGCCTGGGCGTGCACCGCGTCCGCATCCTCACTGCGGCCAGAGGTCAGCCTG
CCCACCTGGGCCCCTACCTCTGTCCTAGTCCCGCCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
6-295, gnl|bosTau2|chr19 (13414181-13414472) |
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6-295, gnl|Hg17|chr17 (23735794-23736076) |
| |
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304-576, gnl|bosTau2|chr19 (13414565-13414838) |
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304-576, gnl|canFam2|chr9 (45955958-45956180) |
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304-576, gnl|dasNov1|scaffold_32457 (41129-41356) |
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304-576, gnl|echTel1|scaffold_247682 (6736-6969) |
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304-576, gnl|fr1|chrUn (263742163-263742360) |
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304-576, gnl|galGal2|chr19 (5307073-5307282) |
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304-576, gnl|hg17|chr17 (23736141-23736372) |
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304-576, gnl|Hg17|chr17 (23736194-23736461) |
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304-576, gnl|loxAfr1|scaffold_43850 (9637-9865) |
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304-576, gnl|mm7|chr11 (78569078-78568849) |
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304-576, gnl|Mm7|chr11 (78569025-78568764) |
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304-576, gnl|monDom2|scaffold_44 (14194892-14195116) |
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304-576, gnl|panTro1|chr19 (27074327-27074558) |
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304-576, gnl|rheMac2|chr16 (23567980-23568211) |
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304-576, gnl|rn3|chr10 (64612165-64611936) |
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304-576, gnl|tetNig1|chr10 (10134980-10134787) |
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304-576, gnl|xenTro1|scaffold_50 (1720047-1719799) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
6-295, gnl|bosTau2|chr19 (13414181-13414472) |
|
6-295, gnl|Hg17|chr17 (23735794-23736076) |
| |
|
304-576, gnl|bosTau2|chr19 (13414565-13414838) |
|
304-576, gnl|canFam2|chr9 (45955958-45956180) |
|
304-576, gnl|dasNov1|scaffold_32457 (41129-41356) |
|
304-576, gnl|echTel1|scaffold_247682 (6736-6969) |
|
304-576, gnl|fr1|chrUn (263742163-263742360) |
|
304-576, gnl|galGal2|chr19 (5307073-5307282) |
|
304-576, gnl|hg17|chr17 (23736141-23736372) |
|
304-576, gnl|Hg17|chr17 (23736194-23736461) |
|
304-576, gnl|loxAfr1|scaffold_43850 (9637-9865) |
|
304-576, gnl|mm7|chr11 (78569078-78568849) |
|
304-576, gnl|Mm7|chr11 (78569025-78568764) |
|
304-576, gnl|monDom2|scaffold_44 (14194892-14195116) |
|
304-576, gnl|panTro1|chr19 (27074327-27074558) |
|
304-576, gnl|rheMac2|chr16 (23567980-23568211) |
|
304-576, gnl|rn3|chr10 (64612165-64611936) |
|
304-576, gnl|tetNig1|chr10 (10134980-10134787) |
|
304-576, gnl|xenTro1|scaffold_50 (1720047-1719799) |
