Non-Coding RNA Search

Ss1.1-Pig4-TMW8036K15.5

Sequence:


               
               TCTTGGCTAATGAATTAGATTCTTACGTGGCTGACATAGCGTGTCCATGACAAGGTGACA
GTGTAGAGAAGGACAGGAAGGAGAGGGAAGAATGAAGAGGGACGTAAACTTTTGTCAGCA
CGCTAAGACACACGAACGTAACATCCCAGCCTTTGTCCCAGGAAAATGGGCCCAGTGATG
AGAACATACAGAGCACCTCTGGGTCATTTGCCCTAATATTATGATTTGTAATCCTCGACT
ATTAAAAAAAATCGATGGCAGAAAGTGAGGTGTGAGTGACGTTCTGAAGCGTCACAGCAA
AGAGGCTTTTTGTCAATCTTACAGTCAGACCTCCAGCCCAGTCCACTGGGCGGTTCTAGA
AAACAGCTAAGTTACCTTTGACACCTAGAGTTGTAAGCTCCACATATGGATGAAAATGTG
TTGAAGAAATCTTGTTGCTTCACTCTTGGGGCTCCCTGACTCCCATCACGGTGTTACCCA
CAAACTTTGCATTTGAAACACAGTGAAGCAGTGGCTCTCCTTGGTGGCAAGGGATACGTT
GACAGCTTAGCTGTTCCTCTGGGAGACCTGTCCCCTGCAGGTCCCTAGAGGATATGTTGT
TAGCAAGTGAAAAGCTCTTCAAAGAATCACATATCCACAGAAATCTGCCCCATGGAATAG
TGTCACAGCCCAGAACACCCTCACTGGAGTTTTGGAAGACAGACCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGGCTAATGAATTAGATTCTTACGTGGCTGACATAGCGTGTCCATGACAAGGTGACA
GTGTAGAGAAGGACAGGAAGGAGAGGGAAGAATGAAGAGGGACGTAAACTTTTGTCAGCA
CGCTAAGACACACGAACGTAACATCCCAGCCTTTGTCCCAGGAAAATGGGCCCAGTGATG
AGAACATACAGAGCACCTCTGGGTCATTTGCCCTAATATTATGATTTGTAATCCTCGACT
ATTAAAAAAAATCGATGGCAGAAAGTGAGGTGTGAGTGACGTTCTGAAGCGTCACAGCAA
AGAGGCTTTTTGTCAATCTTACAGTCAGACCTCCAGCCCAGTCCACTGGGCGGTTCTAGA
AAACAGCTAAGTTACCTTTGACACCTAGAGTTGTAAGCTCCACATATGGATGAAAATGTG
TTGAAGAAATCTTGTTGCTTCACTCTTGGGGCTCCCTGACTCCCATCACGGTGTTACCCA
CAAACTTTGCATTTGAAACACAGTGAAGCAGTGGCTCTCCTTGGTGGCAAGGGATACGTT
GACAGCTTAGCTGTTCCTCTGGGAGACCTGTCCCCTGCAGGTCCCTAGAGGATATGTTGT
TAGCAAGTGAAAAGCTCTTCAAAGAATCACATATCCACAGAAATCTGCCCCATGGAATAG
TGTCACAGCCCAGAACACCCTCACTGGAGTTTTGGAAGACAGACCCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               18-133, - strand, RNAz p=0.76507
               

               
               507-643, + strand, RNAz p=0.999998

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               18-133, - strand, RNAz p=0.76507
               

               
               507-643, + strand, RNAz p=0.999998

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               569-655, + strand, RNAmicro p=0.995552

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               569-655, + strand, RNAmicro p=0.995552

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               18-693, gnl|bosTau2|chr3 (43401672-43402360)
               

               
               18-693, gnl|Hg17|chr1 (91064766-91063839)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-693, gnl|bosTau2|chr3 (43401672-43402360)
               

               
               18-693, gnl|Hg17|chr1 (91064766-91063839)

	18-133, - strand, RNAz p=0.76507
	507-643, + strand, RNAz p=0.999998

	18-693, gnl\|bosTau2\|chr3 (43401672-43402360)
	18-693, gnl\|Hg17\|chr1 (91064766-91063839)