Non-Coding RNA Search

Ss1.1-Pig4-TMW8036L11.5

Sequence:


               
               TGGCCGCGGGCGTCTAGCTTGCACCTGTGGGGCCGGTCCGCCGCTTGCAGCGCCCCGCGT
CCTCTCCGCGCAATTTGCGGGTCCCGCGGGGCCTGGGCTGCGGGCCCGCGGGCCCCGGGG
ATGGCGTCGGAGCCGCACTAACTCCGTTTCTCCTCGGACCAAGATGACTGATGGGAACCT
TTCCGCCTCTACAAATGGCGTAGCCTTGATGGGCCTTCTGGACGCTCGGCCAGGAAACCA
CATTCAGAACCTGCACCCCTTGAACCTCAAGGCGCCCCGCTCCCTCTCGCTGCCGGAGTC
CGGGCCCCAGCTGAAACCGGGTGCTTTGGAGGACCGGCACAGCCTCAAGTCGGTGGACTC
GGGTATCCCCACCCTAGAGATTGGCAACCCGGAGCCCGTGCCCTGCAGCGTGGTGCACGT
GAAGAGGAAGCAGTCGGCGGCAGAGGTCGTCCCTGAGCGGGCCTGCCAGAGCGCGTGCCC
GCTGCCGTCCTGCGCGCCCCCGGCCCCGGGCAGCGGCGCCGAGCGGGAGCCGAGCGTGCG
CAAGTCCTCCACGTTCCCCAGGACGGGCTATGACTCGGTGAAGCTCTACAGCCCCAGCTC
CAAGGCCCTGAACCGCAGCGACAATGTGTCTGTCTGCAGCGTGTCCAGCCTGGGCACGGA
GCTGTCCACCACGCTGTCCGTCAGCAATGAGGACATCTTGGACCTCGTGGTCACGAGCAG
CTCCAGCGCCATCGTGACCCTGGAGAACGACGATGACCCCCAGTTCACGGACGTCACCTT
GAGCGCTGGCAAGGAAGCCCGTGACCTACGCCCGCCAGACGGTGCCGACCCCACCGAGGA
GGGGCGGAAACTGAGGCTGTTGGGGCCGTTCAGTAGCTTCTTCACACGGAATTTGCTTGC
TAGAAAACAAAATGCAAGGCTCGACAAACAGAACGACTTGGGATGGAAGTTATTTGGAAA
AGTACCACTCCGAGAGAATGCTCAGAAAGATTCGAAGAAAATGCAAAAGGTATACGAGCT
ACAAATACACAGAGAGATGCTATACAGCTTATGTTTATCAACCATGTGAAAATGACCGTT
ATGGAGGCTTTGAACTTGAATAACTTTAACTTGCATGCTAAGTACCTAAAATCTGTCTTC
AGAATGTGGGTGACTTGAACCTTTTTCTTTTCTCAGTTTGTGATGCACCCACAGGAGAGC
TTGGTTGAGAGAGCTGGGCTTTAGATGTATATACCTTGATTAAGTTTAATCAGTTTTTTT
TTTCAGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCGCGGGCGTCTAGCTTGCACCTGTGGGGCCGGTCCGCCGCTTGCAGCGCCCCGCGT
CCTCTCCGCGCAATTTGCGGGTCCCGCGGGGCCTGGGCTGCGGGCCCGCGGGCCCCGGGG
ATGGCGTCGGAGCCGCACTAACTCCGTTTCTCCTCGGACCAAGATGACTGATGGGAACCT
TTCCGCCTCTACAAATGGCGTAGCCTTGATGGGCCTTCTGGACGCTCGGCCAGGAAACCA
CATTCAGAACCTGCACCCCTTGAACCTCAAGGCGCCCCGCTCCCTCTCGCTGCCGGAGTC
CGGGCCCCAGCTGAAACCGGGTGCTTTGGAGGACCGGCACAGCCTCAAGTCGGTGGACTC
GGGTATCCCCACCCTAGAGATTGGCAACCCGGAGCCCGTGCCCTGCAGCGTGGTGCACGT
GAAGAGGAAGCAGTCGGCGGCAGAGGTCGTCCCTGAGCGGGCCTGCCAGAGCGCGTGCCC
GCTGCCGTCCTGCGCGCCCCCGGCCCCGGGCAGCGGCGCCGAGCGGGAGCCGAGCGTGCG
CAAGTCCTCCACGTTCCCCAGGACGGGCTATGACTCGGTGAAGCTCTACAGCCCCAGCTC
CAAGGCCCTGAACCGCAGCGACAATGTGTCTGTCTGCAGCGTGTCCAGCCTGGGCACGGA
GCTGTCCACCACGCTGTCCGTCAGCAATGAGGACATCTTGGACCTCGTGGTCACGAGCAG
CTCCAGCGCCATCGTGACCCTGGAGAACGACGATGACCCCCAGTTCACGGACGTCACCTT
GAGCGCTGGCAAGGAAGCCCGTGACCTACGCCCGCCAGACGGTGCCGACCCCACCGAGGA
GGGGCGGAAACTGAGGCTGTTGGGGCCGTTCAGTAGCTTCTTCACACGGAATTTGCTTGC
TAGAAAACAAAATGCAAGGCTCGACAAACAGAACGACTTGGGATGGAAGTTATTTGGAAA
AGTACCACTCCGAGAGAATGCTCAGAAAGATTCGAAGAAAATGCAAAAGGTATACGAGCT
ACAAATACACAGAGAGATGCTATACAGCTTATGTTTATCAACCATGTGAAAATGACCGTT
ATGGAGGCTTTGAACTTGAATAACTTTAACTTGCATGCTAAGTACCTAAAATCTGTCTTC
AGAATGTGGGTGACTTGAACCTTTTTCTTTTCTCAGTTTGTGATGCACCCACAGGAGAGC
TTGGTTGAGAGAGCTGGGCTTTAGATGTATATACCTTGATTAAGTTTAATCAGTTTTTTT
TTTCAGCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842789|ref|XP_602003.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842789|ref|XP_602003.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               622-741, - strand, RNAz p=0.714193

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               622-741, - strand, RNAz p=0.714193

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               146-885, gnl|bosTau2|chr6 (68986714-68987447)
               

               
               146-885, gnl|Hg17|chr4 (7043171-7043907)
               

               
               146-885, gnl|Mm7|chr5 (35634843-35634104)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-885, gnl|bosTau2|chr6 (68986714-68987447)
               

               
               146-885, gnl|Hg17|chr4 (7043171-7043907)
               

               
               146-885, gnl|Mm7|chr5 (35634843-35634104)

	146-885, gnl\|bosTau2\|chr6 (68986714-68987447)
	146-885, gnl\|Hg17\|chr4 (7043171-7043907)
	146-885, gnl\|Mm7\|chr5 (35634843-35634104)