Ss1.1-Pig4-TMW8036L19.5
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TGTAAACGGGGGAGCACTTGACTCTGCATCTGTAGTTGAAGCAGTTCTAGAAGCTGAAGG
GTGTTCCTCTTAAGAAATCTTCAAGTACCATCTTTAGAAGCAAAGCACACAACAGCTGGG
GGGTGGGTACACAGGACAGTTAAAAGGTACCTAATGGTATCTGGACAGGACACTGGAGTG
TCCTTTCTACCCAGGCACATGCTGTCTCACTTCCCCACTCCTGTGGGAGCATTTTTAATC
CCTTAGGCCATTTTCTGGTGCACATTACCTACTTTGAGAAGCTGTATAAATTCATTTTCT
TCCCTTGAGCAGTTAATAAGCACTGCTTCAAATATCTAAGTCCTAAAGTGATTGCAGCAT
TGAGAGACACTTGGGTAATTTTCAATCAGTAGAATTTCTACATATGTTAGAGTTAAAAAA
AATAAAGCGTGTCATTTGAGAGCTTTCTTTAGATGAATGTCATCATGGGTAATGATTTCA
GTGCCCTGTAAAAACATGCAAGGATATCGTATGACCATGTGGTTGGCATGTATTCATGCT
AGAAACAGTTCCATGTATACATATTAAATATTATTTTCATTCTCATTCCTTTTAGCCATC
CATTTAAATTTTGTATCCTAACATTTCACTTTTGCCTTTAAAAATATTTTCCTAAACCTT
TTAGTGAAAAAGGTGGTGTTTCCTCATGCACCCTCAATTCAGTATAGCACAAAAGTGTGG
TCCACTAGAAATATCACGTAAGCATGAGTAATTTAAAATTTTCCTGTAGTCTGATTTAAA
AAGTGAAAAAAAAAAAAATAGATCGTGATTAACAACCCGAGCTAGAGGCTGGGAAGTGCA
AGATCCCACTTGAAATTAATTTTTGTAGTATATATAGCCCAGCAATCCTAGTTATTAACA
TGAGATTTTACTTTTTTAAAATAGAATTTTCATATGGCATATATTTTATATTTCATGTGC
TGAAAGGCACCTTTGACCATTGGCACTGTATTGGACAGTGCAACTTCAGAGTGTTATAGA
AAAGCTCTGGTAAGAGGCTTACTTCCTTTGAGATAAAACTTTTTGTCACCACTTTTGAAT
TGCCCAGCTTGATCACCCCATTCAATAAAGAAACAAGGTGGCATTGTTGTCCCAAGAAAG
TGAGCTGATCTGTTCTTGATGAGCCATTGCTCCTTCCATTTGAGGACTTAATGCCCTGTA
GGCATGAATTATGATTTAAATGATTGGTTTTGACAGCTAAGTATCACTGATAGCTTTCAG
GAGTGCAGAATTATAGGATCACTTTTTGGAAGACATTGGGTCTTGAATGAAGGATGGAAG
GTAGAAAGATTTTAGAGAGGAAAAGAGAGCATCTTAGACCATGCCAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TGTAAACGGGGGAGCACTTGACTCTGCATCTGTAGTTGAAGCAGTTCTAGAAGCTGAAGG
GTGTTCCTCTTAAGAAATCTTCAAGTACCATCTTTAGAAGCAAAGCACACAACAGCTGGG
GGGTGGGTACACAGGACAGTTAAAAGGTACCTAATGGTATCTGGACAGGACACTGGAGTG
TCCTTTCTACCCAGGCACATGCTGTCTCACTTCCCCACTCCTGTGGGAGCATTTTTAATC
CCTTAGGCCATTTTCTGGTGCACATTACCTACTTTGAGAAGCTGTATAAATTCATTTTCT
TCCCTTGAGCAGTTAATAAGCACTGCTTCAAATATCTAAGTCCTAAAGTGATTGCAGCAT
TGAGAGACACTTGGGTAATTTTCAATCAGTAGAATTTCTACATATGTTAGAGTTAAAAAA
AATAAAGCGTGTCATTTGAGAGCTTTCTTTAGATGAATGTCATCATGGGTAATGATTTCA
GTGCCCTGTAAAAACATGCAAGGATATCGTATGACCATGTGGTTGGCATGTATTCATGCT
AGAAACAGTTCCATGTATACATATTAAATATTATTTTCATTCTCATTCCTTTTAGCCATC
CATTTAAATTTTGTATCCTAACATTTCACTTTTGCCTTTAAAAATATTTTCCTAAACCTT
TTAGTGAAAAAGGTGGTGTTTCCTCATGCACCCTCAATTCAGTATAGCACAAAAGTGTGG
TCCACTAGAAATATCACGTAAGCATGAGTAATTTAAAATTTTCCTGTAGTCTGATTTAAA
AAGTGAAAAAAAAAAAAATAGATCGTGATTAACAACCCGAGCTAGAGGCTGGGAAGTGCA
AGATCCCACTTGAAATTAATTTTTGTAGTATATATAGCCCAGCAATCCTAGTTATTAACA
TGAGATTTTACTTTTTTAAAATAGAATTTTCATATGGCATATATTTTATATTTCATGTGC
TGAAAGGCACCTTTGACCATTGGCACTGTATTGGACAGTGCAACTTCAGAGTGTTATAGA
AAAGCTCTGGTAAGAGGCTTACTTCCTTTGAGATAAAACTTTTTGTCACCACTTTTGAAT
TGCCCAGCTTGATCACCCCATTCAATAAAGAAACAAGGTGGCATTGTTGTCCCAAGAAAG
TGAGCTGATCTGTTCTTGATGAGCCATTGCTCCTTCCATTTGAGGACTTAATGCCCTGTA
GGCATGAATTATGATTTAAATGATTGGTTTTGACAGCTAAGTATCACTGATAGCTTTCAG
GAGTGCAGAATTATAGGATCACTTTTTGGAAGACATTGGGTCTTGAATGAAGGATGGAAG
GTAGAAAGATTTTAGAGAGGAAAAGAGAGCATCTTAGACCATGCCAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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374-682, gnl|bosTau2|chr13 (98826-99132) |
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374-682, gnl|Hg17|chr20 (9150342-9150651) |
| |
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948-1368, gnl|bosTau2|chr13 (100123-100533) |
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948-1368, gnl|canFam2|chr24 (16001808-16001518) |
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948-1368, gnl|dasNov1|scaffold_26757 (4272-4005) |
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948-1368, gnl|hg17|chr20 (9151325-9151639) |
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948-1368, gnl|Hg17|chr20 (9151380-9151782) |
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948-1368, gnl|mm7|chr2 (135550944-135551233) |
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948-1368, gnl|Mm7|chr2 (135551005-135551382) |
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948-1368, gnl|oryCun1|scaffold_181907 (7570-7883) |
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948-1368, gnl|panTro1|chr21_random (20790318-20790005) |
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948-1368, gnl|rheMac2|chr10 (42533005-42533319) |
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948-1368, gnl|rn3|chr3 (123770650-123770925) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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374-682, gnl|bosTau2|chr13 (98826-99132) |
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374-682, gnl|Hg17|chr20 (9150342-9150651) |
| |
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948-1368, gnl|bosTau2|chr13 (100123-100533) |
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948-1368, gnl|canFam2|chr24 (16001808-16001518) |
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948-1368, gnl|dasNov1|scaffold_26757 (4272-4005) |
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948-1368, gnl|hg17|chr20 (9151325-9151639) |
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948-1368, gnl|Hg17|chr20 (9151380-9151782) |
|
948-1368, gnl|mm7|chr2 (135550944-135551233) |
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948-1368, gnl|Mm7|chr2 (135551005-135551382) |
|
948-1368, gnl|oryCun1|scaffold_181907 (7570-7883) |
|
948-1368, gnl|panTro1|chr21_random (20790318-20790005) |
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948-1368, gnl|rheMac2|chr10 (42533005-42533319) |
|
948-1368, gnl|rn3|chr3 (123770650-123770925) |
