Non-Coding RNA Search

Ss1.1-Pig4-TMW8036P13.5

Sequence:


               
               CAACTCTCAAATCATTAAAGTAAAATGGGCACAAAATAAATTAAAAGCAGAAATGGATTT
ACACAGGGATTGAACCTGTGCCACAGCAGCCACCAGAGCCACAGTGGTGAAAACGCAGGA
GCCTTAACCCACTAAGCCATCAGTGAACTTCCTACATTTATATTTTTGTCTTATTCTTTA
TTTGCCTAACTTGCCCACCCTCCTCCTTACTTAAACTGTAAATTTTTTGAAAGTAGGGGC
CATTTTCCTGATCTTGATAATCCCTATAATCCTTGGTATAGTATTTTCTCATAGGAGGCT
TTCAATAAATATTTATTGCATTTAATTAATTTGTAGTCTAGTTTCTGACCACTCTTTTCT
GAGGCTGTATTCTTGAACATAATTAGGGATTTCCAAATTGCCAAAATCATTAACCTTTTT
TCTGCTCAGTTCTCCTTTTCCTTAATCTCTCTGTGGTATTTCTTGAAGTTTTATTGAAGT
ATAGTTAATTTACAAGTCGGTGATAATTTCTGCTATATCTCTGCAGTATTTAATACTGCT
AATCACCTGCCCTTTACTTCAAACTTTTGGTCTCCATGGAATTGGACTGTCCAGGTCTGT
CTTTTCTAGGATCATTTCCTGCTGTTGCTGACGCTTTTTCCTCCTTGACAAAAATAATCA
TGACTTTTTTCAGGACCATTCCTCCAAATTGTATCCTTCCTTCTTATATTTCCTCAGTTT
CTATGTTAGAAACCACATCTCAGTCTTAGAGTCATTGGCCCTAAGGTCATCCTCAGGCTC
AGATCTGTGACGCAGATCTCCTTTCTTAACTTTGAACAGGTTGACAGTTACTTCCACCTA
ACCCCTTGGAGTTCTTTCAAGCCTTGCTGTGCTGTCTCTTCACTGTCTTCCTGCCACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTCTCAAATCATTAAAGTAAAATGGGCACAAAATAAATTAAAAGCAGAAATGGATTT
ACACAGGGATTGAACCTGTGCCACAGCAGCCACCAGAGCCACAGTGGTGAAAACGCAGGA
GCCTTAACCCACTAAGCCATCAGTGAACTTCCTACATTTATATTTTTGTCTTATTCTTTA
TTTGCCTAACTTGCCCACCCTCCTCCTTACTTAAACTGTAAATTTTTTGAAAGTAGGGGC
CATTTTCCTGATCTTGATAATCCCTATAATCCTTGGTATAGTATTTTCTCATAGGAGGCT
TTCAATAAATATTTATTGCATTTAATTAATTTGTAGTCTAGTTTCTGACCACTCTTTTCT
GAGGCTGTATTCTTGAACATAATTAGGGATTTCCAAATTGCCAAAATCATTAACCTTTTT
TCTGCTCAGTTCTCCTTTTCCTTAATCTCTCTGTGGTATTTCTTGAAGTTTTATTGAAGT
ATAGTTAATTTACAAGTCGGTGATAATTTCTGCTATATCTCTGCAGTATTTAATACTGCT
AATCACCTGCCCTTTACTTCAAACTTTTGGTCTCCATGGAATTGGACTGTCCAGGTCTGT
CTTTTCTAGGATCATTTCCTGCTGTTGCTGACGCTTTTTCCTCCTTGACAAAAATAATCA
TGACTTTTTTCAGGACCATTCCTCCAAATTGTATCCTTCCTTCTTATATTTCCTCAGTTT
CTATGTTAGAAACCACATCTCAGTCTTAGAGTCATTGGCCCTAAGGTCATCCTCAGGCTC
AGATCTGTGACGCAGATCTCCTTTCTTAACTTTGAACAGGTTGACAGTTACTTCCACCTA
ACCCCTTGGAGTTCTTTCAAGCCTTGCTGTGCTGTCTCTTCACTGTCTTCCTGCCACCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               715-859, - strand, RNAz p=0.982473

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               715-859, - strand, RNAz p=0.982473

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               118-461, gnl|bosTau2|chr5 (33682426-33682770)
               

               
               118-461, gnl|Hg17|chr12 (54595776-54595313)
               


               
               519-898, gnl|bosTau2|chr5 (33682758-33683143)
               

               
               519-898, gnl|Hg17|chr12 (54595325-54594628)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-461, gnl|bosTau2|chr5 (33682426-33682770)
               

               
               118-461, gnl|Hg17|chr12 (54595776-54595313)
               


               
               519-898, gnl|bosTau2|chr5 (33682758-33683143)
               

               
               519-898, gnl|Hg17|chr12 (54595325-54594628)

	118-461, gnl\|bosTau2\|chr5 (33682426-33682770)
	118-461, gnl\|Hg17\|chr12 (54595776-54595313)

	519-898, gnl\|bosTau2\|chr5 (33682758-33683143)
	519-898, gnl\|Hg17\|chr12 (54595325-54594628)