Non-Coding RNA Search

Ss1.1-Pig4-TMW8037F04.3

Sequence:


               
               TGTGTGTGTGTGTGTGTGTGTGTGCACGCGTGTGCGAGCACTGGTATGTGAGGCACGTGC
CTGGGCATTAACCCACCATCCCTGGCTCCTTCGGGAAACCCTAGGATGGTTGTTGCCAAG
ATAATTAATATTTACTAAGTATGTATGTTCAGTGTGGTTTCCGTGTATTTAATCATAGAC
CCCATGATGTATATAGGCCCAGACACAACAGAATTTGGCGGGTGTTTCGGGTGGGCAGAT
AACCTCCACAGGGTGGTTTGGGGGCCCAGGCCATCTTGTCAGCTTTTCGTCTTTCACACG
GTCATGGCTGTGTCCGTGGCCTGGCTTCTGCTGGTGGAAGGGGAGAGGGAGCCTGGAGAG
GTACATGTGTTCTCTTAGAAGCCCCAGCCTGCAAGAGGTGCTGCTTCCACTTAGCTTCCT
TTGTGGAGAGATTAGTCACATGGCCACAGCTTGCAGCAAGGGAGTCTGGGAAAGGCGGTC
TAGCCAAGTGCCCAGAAAGCGGAAAACAGTTTGTGGAAGACAGCTCGTGCTCTCTGCCAT
TTCATCCAGGACCCTCACAAAGAGGACTTGAATTATAATCATAGCTGTGCTTCACGAGCG
CTTCCTGGGTGCCAAGTGCCGGTCCAAGAGCTTTACAGATATTGACTCGGAGAAGTGGTG
CATTTAGGAACTTACAAAAATAGAACCTTAATTATAATTACAGCTGCCATTTTACCCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGTGTGTGTGTGTGTGTGTGCACGCGTGTGCGAGCACTGGTATGTGAGGCACGTGC
CTGGGCATTAACCCACCATCCCTGGCTCCTTCGGGAAACCCTAGGATGGTTGTTGCCAAG
ATAATTAATATTTACTAAGTATGTATGTTCAGTGTGGTTTCCGTGTATTTAATCATAGAC
CCCATGATGTATATAGGCCCAGACACAACAGAATTTGGCGGGTGTTTCGGGTGGGCAGAT
AACCTCCACAGGGTGGTTTGGGGGCCCAGGCCATCTTGTCAGCTTTTCGTCTTTCACACG
GTCATGGCTGTGTCCGTGGCCTGGCTTCTGCTGGTGGAAGGGGAGAGGGAGCCTGGAGAG
GTACATGTGTTCTCTTAGAAGCCCCAGCCTGCAAGAGGTGCTGCTTCCACTTAGCTTCCT
TTGTGGAGAGATTAGTCACATGGCCACAGCTTGCAGCAAGGGAGTCTGGGAAAGGCGGTC
TAGCCAAGTGCCCAGAAAGCGGAAAACAGTTTGTGGAAGACAGCTCGTGCTCTCTGCCAT
TTCATCCAGGACCCTCACAAAGAGGACTTGAATTATAATCATAGCTGTGCTTCACGAGCG
CTTCCTGGGTGCCAAGTGCCGGTCCAAGAGCTTTACAGATATTGACTCGGAGAAGTGGTG
CATTTAGGAACTTACAAAAATAGAACCTTAATTATAATTACAGCTGCCATTTTACCCGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-154, - strand, RNAz p=0.964508
               

               
               492-610, - strand, RNAz p=0.810441

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-154, - strand, RNAz p=0.964508
               

               
               492-610, - strand, RNAz p=0.810441

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-716, gnl|bosTau2|chr18 (46225823-46226548)
               

               
               1-716, gnl|Hg17|chr19 (48803423-48802726)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-716, gnl|bosTau2|chr18 (46225823-46226548)
               

               
               1-716, gnl|Hg17|chr19 (48803423-48802726)

	1-154, - strand, RNAz p=0.964508
	492-610, - strand, RNAz p=0.810441

	1-716, gnl\|bosTau2\|chr18 (46225823-46226548)
	1-716, gnl\|Hg17\|chr19 (48803423-48802726)