Non-Coding RNA Search

Ss1.1-Pig4-TMW8037M08.3

Sequence:


               
               CAAAGCCCTGCCAAACTTGTGCCTCCTCAGCATACAATAGTATGTTTAAGTATGTGTAAA
CCAAGCCTATTTTTCTTTGCAACTATTGATTTTTAAATGAAGTATCAAAGAAAATCAATA
GCAATCAACAAATAGAAGTCTGCTGGCTATAGTGTCAAATCCCATGACTAGGTTTAATCA
ATTTGGTTGCCTGTCACAACAAGAAAAAGTTCAAGAAATAGCTTGAAATGGAAAGTGAGT
TGTCAGACCTGTAGTTTATCATCAGCCTCCAAAGTGACATCTGAGGATCAGATAACTGTG
TAGTCCATTATTACCTCACAAGCTTTGAACATCATTTGATGACTGATGAGTCTTGTTTGA
GGACACAAATGTAGTTCCTTCTTAGTAGATTATTTGCTCTTTGAAGGAATGTAGTCTGCA
TATGTTGTTATACATTTATTCTGAAATGTTTCAAAAGATAGAGAAGCTTGACCCATGGGC
TTATGGAAATATAGGTCTAGAATAATGGTAAATAGTTTCCAATTTCAGATTGTGATTAAG
GAAGGTATCCATTTCATCTTACAGAATTGGTGAAAACTTCGGAGTACTCATCCAGGCAAA
AAATACAAAAGGCTTTTTTGATTGTATTTTTTGAGTTTCTGAAGTTTATAAAAACAGTTT
CACAGTTCATATACTTCAGGGTATTACTGACCTTCATTTCTAGTTTATGCTAAGAACTTG
CTGACTTTCTGACACTGAAATGTTAGAGTCCATTCTTTGGACATTTCTTTTTTTTTCCCT
CTCTATGTCCGCATCTCCTTAGTGCATTCATCCAGTCCTATGGCTTTAAATTTTCTCTAC
TTTTGATGACTGACAATTTTGTATCTTCAATTTTACTCACACTTAGTATGTCCAGAACAA
GCTCCTGCTTTTTCCTCCATACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCCCTGCCAAACTTGTGCCTCCTCAGCATACAATAGTATGTTTAAGTATGTGTAAA
CCAAGCCTATTTTTCTTTGCAACTATTGATTTTTAAATGAAGTATCAAAGAAAATCAATA
GCAATCAACAAATAGAAGTCTGCTGGCTATAGTGTCAAATCCCATGACTAGGTTTAATCA
ATTTGGTTGCCTGTCACAACAAGAAAAAGTTCAAGAAATAGCTTGAAATGGAAAGTGAGT
TGTCAGACCTGTAGTTTATCATCAGCCTCCAAAGTGACATCTGAGGATCAGATAACTGTG
TAGTCCATTATTACCTCACAAGCTTTGAACATCATTTGATGACTGATGAGTCTTGTTTGA
GGACACAAATGTAGTTCCTTCTTAGTAGATTATTTGCTCTTTGAAGGAATGTAGTCTGCA
TATGTTGTTATACATTTATTCTGAAATGTTTCAAAAGATAGAGAAGCTTGACCCATGGGC
TTATGGAAATATAGGTCTAGAATAATGGTAAATAGTTTCCAATTTCAGATTGTGATTAAG
GAAGGTATCCATTTCATCTTACAGAATTGGTGAAAACTTCGGAGTACTCATCCAGGCAAA
AAATACAAAAGGCTTTTTTGATTGTATTTTTTGAGTTTCTGAAGTTTATAAAAACAGTTT
CACAGTTCATATACTTCAGGGTATTACTGACCTTCATTTCTAGTTTATGCTAAGAACTTG
CTGACTTTCTGACACTGAAATGTTAGAGTCCATTCTTTGGACATTTCTTTTTTTTTCCCT
CTCTATGTCCGCATCTCCTTAGTGCATTCATCCAGTCCTATGGCTTTAAATTTTCTCTAC
TTTTGATGACTGACAATTTTGTATCTTCAATTTTACTCACACTTAGTATGTCCAGAACAA
GCTCCTGCTTTTTCCTCCATACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-359, - strand, RNAz p=0.997796

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-359, - strand, RNAz p=0.997796

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-917, gnl|bosTau2|chr21 (21177231-21176303)
               

               
               1-917, gnl|Hg17|chr15 (74744821-74743889)
               

               
               1-917, gnl|Mm7|chr9 (55789669-55788650)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-917, gnl|bosTau2|chr21 (21177231-21176303)
               

               
               1-917, gnl|Hg17|chr15 (74744821-74743889)
               

               
               1-917, gnl|Mm7|chr9 (55789669-55788650)

	1-917, gnl\|bosTau2\|chr21 (21177231-21176303)
	1-917, gnl\|Hg17\|chr15 (74744821-74743889)
	1-917, gnl\|Mm7\|chr9 (55789669-55788650)