Non-Coding RNA Search

Ss1.1-Pig4-TMW8038C10.3

Sequence:


               
               GCTTAAATGGCATGCCTATTGAGTTCATAGCTAGTTTAGTGGTATGGGACATATAAATAC
TAAAATACGTTTGTTTACCCATCTTCAGTTTTGTAGGAGAATTTTGTATATTTTTTCCTC
TCTCCCACCTTTAAGAACTCCAGTGTACATCTACTTAAAAATGTTTTAATACTTATAGTT
TAGAAAAACGTTTCTCTAAGATACCCAGAGTGTGTGCTTATTTTATCTCCCATAAAATAG
TAAATCTTCCTGGCTCTTTAGAGGCATTTGGGGTAACTAGTTGAGAACACAGAACTCAGT
TTTAAAAGAGAATGTATTACAGTGTATTTAGAGGAAAGTTGTCTCAGAAACCTGTGTGTG
TGTGTGTGTGTGTGTGTAGGTGGGAGGTGGGACCACTTAAGTCCTCTTTGAATCATCTTA
GCAGAAGTGGTCGTGTAATCCCACTTGTGGTCCATGAGCCAGGAGCATTTCTTGTAAGAA
ATCAGGCTACACAGTCATTGTCACAGAGACCTACCTCTGAAGTTTTTCCAGCCATGGGAC
TTGTTTTGTTCTGATCTATTGAGCACTTTATTTTGCTCAGCCAGCTGCTTTCTAACCACT
TTCTCTCTGCCTTCCTTCTTGAGATTCAGATTGCTGAATAATTCATAGTGTTGGTTGACA
GATAAAATGATAAGATTTATATGTCTTTGGCCTTGGTGATGAATTAATTAAATTGGTTTC
TCTTTCTCTCTCTCCTCTAGATGCATTGTTTGGCTTCTTTAAAATTTGCTGGCACTTGGT
AGGTCTGGAGATTAACTTGTTCTCGAAAGGCCACCACAGGAAGCTTATACTTTCCTAATG
TAAATTTCTTTAGGTCTTTCAACATGGATCATTGCAGGGGGTTGTGGAGGCGAGGGCTGC
CATATCATAGGGAGAAGAGATGAGATAACTGAACAGTTCCTTCCAGGAAAAAAACAAAAC
AAAACCCTTCCCAACCTGGCTGATGACTGTAATTCAGCTGTTAAGAACATATTGCTTTAT
AATCTGATTTTGAATCTGAAAGAGGTAACATATTCTGTTTCACATTGTAATGGATGAATT
TATCGAATGTGAGAAAGCTTGCTTTGCTTAGGCTCCTGTGTGACCTGGGAGGGAGGCAAA
TCTCAGAAGGTAAAACCTGAACTTATTCAGGCTTCCCTTCCAGTATTAGTTTGTTAGGAT
GGCCATAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTAAATGGCATGCCTATTGAGTTCATAGCTAGTTTAGTGGTATGGGACATATAAATAC
TAAAATACGTTTGTTTACCCATCTTCAGTTTTGTAGGAGAATTTTGTATATTTTTTCCTC
TCTCCCACCTTTAAGAACTCCAGTGTACATCTACTTAAAAATGTTTTAATACTTATAGTT
TAGAAAAACGTTTCTCTAAGATACCCAGAGTGTGTGCTTATTTTATCTCCCATAAAATAG
TAAATCTTCCTGGCTCTTTAGAGGCATTTGGGGTAACTAGTTGAGAACACAGAACTCAGT
TTTAAAAGAGAATGTATTACAGTGTATTTAGAGGAAAGTTGTCTCAGAAACCTGTGTGTG
TGTGTGTGTGTGTGTGTAGGTGGGAGGTGGGACCACTTAAGTCCTCTTTGAATCATCTTA
GCAGAAGTGGTCGTGTAATCCCACTTGTGGTCCATGAGCCAGGAGCATTTCTTGTAAGAA
ATCAGGCTACACAGTCATTGTCACAGAGACCTACCTCTGAAGTTTTTCCAGCCATGGGAC
TTGTTTTGTTCTGATCTATTGAGCACTTTATTTTGCTCAGCCAGCTGCTTTCTAACCACT
TTCTCTCTGCCTTCCTTCTTGAGATTCAGATTGCTGAATAATTCATAGTGTTGGTTGACA
GATAAAATGATAAGATTTATATGTCTTTGGCCTTGGTGATGAATTAATTAAATTGGTTTC
TCTTTCTCTCTCTCCTCTAGATGCATTGTTTGGCTTCTTTAAAATTTGCTGGCACTTGGT
AGGTCTGGAGATTAACTTGTTCTCGAAAGGCCACCACAGGAAGCTTATACTTTCCTAATG
TAAATTTCTTTAGGTCTTTCAACATGGATCATTGCAGGGGGTTGTGGAGGCGAGGGCTGC
CATATCATAGGGAGAAGAGATGAGATAACTGAACAGTTCCTTCCAGGAAAAAAACAAAAC
AAAACCCTTCCCAACCTGGCTGATGACTGTAATTCAGCTGTTAAGAACATATTGCTTTAT
AATCTGATTTTGAATCTGAAAGAGGTAACATATTCTGTTTCACATTGTAATGGATGAATT
TATCGAATGTGAGAAAGCTTGCTTTGCTTAGGCTCCTGTGTGACCTGGGAGGGAGGCAAA
TCTCAGAAGGTAAAACCTGAACTTATTCAGGCTTCCCTTCCAGTATTAGTTTGTTAGGAT
GGCCATAAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1092-1211, + strand, RNAz p=0.944499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1092-1211, + strand, RNAz p=0.944499

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               353-1211, gnl|bosTau2|chr10 (63383780-63382935)
               

               
               353-1211, gnl|Hg17|chr14 (78820719-78821546)
               

               
               353-1211, gnl|Mm7|chr12 (87297678-87298441)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               353-1211, gnl|bosTau2|chr10 (63383780-63382935)
               

               
               353-1211, gnl|Hg17|chr14 (78820719-78821546)
               

               
               353-1211, gnl|Mm7|chr12 (87297678-87298441)

	353-1211, gnl\|bosTau2\|chr10 (63383780-63382935)
	353-1211, gnl\|Hg17\|chr14 (78820719-78821546)
	353-1211, gnl\|Mm7\|chr12 (87297678-87298441)