Non-Coding RNA Search

Ss1.1-Pig4-TMW8038D23.5

Sequence:


               
               TTTTGCGGTTACACAGGTTTTCAGATGCTTTTAATTATGGGAGAAAGATTACAGACTTTG
GGCATGCAGTAGCATGCAGCCTTTTATGTTTGCTGCTCTTTTCTCTTCCAGTGGTACTTC
TGTTCAGGAAAAGGTCATGCTTCAGGGACACATTTGTTTCTAAGAAACATTTCTAAAGAT
GTGAAATACAATAGGAGGCCTGGGAATCCATCCCAATTGGCTCCGCAAATACATTATTTT
GAAACATTTTTCACCCACGGGGAAGTTACAACAGTAACATTTTATCAACAGGTGTATTTA
TCATAGCAGTAAGCACATTTCTAGCAAAAACCTGTACAGGAGTCAACAGCAAATATATTC
CAGCCCCTAAGTATAATCCTGCTCTATAAGTATGCCCTCATCTTGTAAGGCTTTGGGAAG
AAGAGTTCTGGAAGTGAGCGTTTTTGGTTTTGTTTTGTTTCTTTCCATAGGCAAGAGGCA
TTTCAGTTATTTTAGGGAGTAACTGGGCAGAAGACAGAGAGGTTGGGGAATGAGGAAAGA
AAGGCTCATGATTAGTACAGCCTCACCTGAAAGGCAGGAATGAGAACCTTTGTTGTTAGG
ACAAAATGAGATAAACCTTTACTTCTATGCCTCTCACAAGATAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGCGGTTACACAGGTTTTCAGATGCTTTTAATTATGGGAGAAAGATTACAGACTTTG
GGCATGCAGTAGCATGCAGCCTTTTATGTTTGCTGCTCTTTTCTCTTCCAGTGGTACTTC
TGTTCAGGAAAAGGTCATGCTTCAGGGACACATTTGTTTCTAAGAAACATTTCTAAAGAT
GTGAAATACAATAGGAGGCCTGGGAATCCATCCCAATTGGCTCCGCAAATACATTATTTT
GAAACATTTTTCACCCACGGGGAAGTTACAACAGTAACATTTTATCAACAGGTGTATTTA
TCATAGCAGTAAGCACATTTCTAGCAAAAACCTGTACAGGAGTCAACAGCAAATATATTC
CAGCCCCTAAGTATAATCCTGCTCTATAAGTATGCCCTCATCTTGTAAGGCTTTGGGAAG
AAGAGTTCTGGAAGTGAGCGTTTTTGGTTTTGTTTTGTTTCTTTCCATAGGCAAGAGGCA
TTTCAGTTATTTTAGGGAGTAACTGGGCAGAAGACAGAGAGGTTGGGGAATGAGGAAAGA
AAGGCTCATGATTAGTACAGCCTCACCTGAAAGGCAGGAATGAGAACCTTTGTTGTTAGG
ACAAAATGAGATAAACCTTTACTTCTATGCCTCTCACAAGATAAATGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               160-276, - strand, RNAz p=0.765003
               

               
               514-626, - strand, RNAz p=0.542791

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-276, - strand, RNAz p=0.765003
               

               
               514-626, - strand, RNAz p=0.542791

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               14-648, gnl|bosTau2|chr28 (8123194-8122568)
               

               
               14-648, gnl|Hg17|chr6 (69541150-69541757)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-648, gnl|bosTau2|chr28 (8123194-8122568)
               

               
               14-648, gnl|Hg17|chr6 (69541150-69541757)

	160-276, - strand, RNAz p=0.765003
	514-626, - strand, RNAz p=0.542791

	14-648, gnl\|bosTau2\|chr28 (8123194-8122568)
	14-648, gnl\|Hg17\|chr6 (69541150-69541757)