Ss1.1-Pig4-TMW8038F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGATGAGCAGCTGTGTTGGACACAGCTGCTGGCCCTCTTTATGTCTTTTCTTGGCATCC TGTGCAAGTGTCCTCTCCAGAACAAGTCTCAGGAGGAATCCTACAATGCCTATCCCCTAC CTGCAGTCAAGGTCTCCATGGACTGGCTGAGACTCAGACCCAGGGTCTTTCAGGAAGCAG TGGTAGATGAAAGACAGTACATTTGGCCCTGGCTAATTTCTCTTCTGAATAGTTTTCATC CCCATGAAGAGGATCTTTCAAGTACCAATGCTACACCGCTTCCAGAGGAATTTGAGTTAC AAGGATTCTTGGCTTTGAGACCTTCTTTCAGGAACTTGGATTTTTCCAAAGGCCACCAGG GTATTACAGGAGACAAAGAGGGTCAGCAGCGACAAATACGGCAGCAGCGCTTGATCTCTA TAGGCAAATGGATCGCAGATAATCTTTTTAGGCTGATTCAGTGTGAAAATGAGGTAGGGA AATTGTTGTTTATCACAGAAATCCCAGAGTTAATACTGGAAGACCCCAGTGAAGCCAAAG AGAACCTCATTCTGCAAGAGACATCCATGATAGAATCCCTGGCTGCCGATGGGAACCCAG GACTGAAGTCAGTGCTGTCTACAGGCCGGAATCTAAGCAACAACTGTGACACAGGAGAGA AACCAGTGGTCACCTTCAAAGAGAACATTAAGCCACGAGAAGGGAACAGAGACCAAGGAA GAAGTTTTCCTCCCAAAGAGGTGAGAAGGGACTATAGCAAAGGAATAACTGTAACTAAGA ATGATGGAAAGAAGGACACCACCAAGAGGAAAACAGAAACCAAGAAATGCACCTTAGAAA AGTTACAGGAAACAGGAAAGCAGAGTGTGGCAGTGCAGGTAAGCTGTATTTGAACTATAA AGCAGGTAGAGGAAGGCTCACACAAAAGGCAAGAGTTTTCATTTTGTTCCTAAAGCCCTG AGAATTGGCTCTTCTGGGAGCTTGAATGCATTCTTAGAGGGCTGCAGAGTAAGGTCATGT AAAGAGCTCTGGTAGATGGGTATTCCATCAATTCTCAGGAATTGTAATAAGAATGAAAAA AAATCTCAACCTGATTTGACATGTTTATCACTTCTCTCCACTTAAAGTCACGGAAATGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGATGAGCAGCTGTGTTGGACACAGCTGCTGGCCCTCTTTATGTCTTTTCTTGGCATCC TGTGCAAGTGTCCTCTCCAGAACAAGTCTCAGGAGGAATCCTACAATGCCTATCCCCTAC CTGCAGTCAAGGTCTCCATGGACTGGCTGAGACTCAGACCCAGGGTCTTTCAGGAAGCAG TGGTAGATGAAAGACAGTACATTTGGCCCTGGCTAATTTCTCTTCTGAATAGTTTTCATC CCCATGAAGAGGATCTTTCAAGTACCAATGCTACACCGCTTCCAGAGGAATTTGAGTTAC AAGGATTCTTGGCTTTGAGACCTTCTTTCAGGAACTTGGATTTTTCCAAAGGCCACCAGG GTATTACAGGAGACAAAGAGGGTCAGCAGCGACAAATACGGCAGCAGCGCTTGATCTCTA TAGGCAAATGGATCGCAGATAATCTTTTTAGGCTGATTCAGTGTGAAAATGAGGTAGGGA AATTGTTGTTTATCACAGAAATCCCAGAGTTAATACTGGAAGACCCCAGTGAAGCCAAAG AGAACCTCATTCTGCAAGAGACATCCATGATAGAATCCCTGGCTGCCGATGGGAACCCAG GACTGAAGTCAGTGCTGTCTACAGGCCGGAATCTAAGCAACAACTGTGACACAGGAGAGA AACCAGTGGTCACCTTCAAAGAGAACATTAAGCCACGAGAAGGGAACAGAGACCAAGGAA GAAGTTTTCCTCCCAAAGAGGTGAGAAGGGACTATAGCAAAGGAATAACTGTAACTAAGA ATGATGGAAAGAAGGACACCACCAAGAGGAAAACAGAAACCAAGAAATGCACCTTAGAAA AGTTACAGGAAACAGGAAAGCAGAGTGTGGCAGTGCAGGTAAGCTGTATTTGAACTATAA AGCAGGTAGAGGAAGGCTCACACAAAAGGCAAGAGTTTTCATTTTGTTCCTAAAGCCCTG AGAATTGGCTCTTCTGGGAGCTTGAATGCATTCTTAGAGGGCTGCAGAGTAAGGTCATGT AAAGAGCTCTGGTAGATGGGTATTCCATCAATTCTCAGGAATTGTAATAAGAATGAAAAA AAATCTCAACCTGATTTGACATGTTTATCACTTCTCTCCACTTAAAGTCACGGAAATGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 445-563, + strand, RNAz p=0.901022 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 445-563, + strand, RNAz p=0.901022 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 37-199, gnl|bosTau2|chr16 (46268733-46268897) | |
| 37-199, gnl|Hg17|chr1 (180234460-180234624) | |
| 37-199, gnl|Mm7|chr1 (152817080-152816919) | |
| 326-444, gnl|bosTau2|chr16 (46274690-46274808) | |
| 326-444, gnl|canFam2|chr7 (19860179-19860287) | |
| 326-444, gnl|dasNov1|scaffold_505 (173025-172925) | |
| 326-444, gnl|echTel1|scaffold_312347 (18099-17997) | |
| 326-444, gnl|fr1|chrUn (307404139-307404219) | |
| 326-444, gnl|galGal2|chr8 (7595852-7595959) | |
| 326-444, gnl|hg17|chr1 (180241742-180241851) | |
| 326-444, gnl|Hg17|chr1 (180241770-180241888) | |
| 326-444, gnl|loxAfr1|scaffold_14266 (36061-36169) | |
| 326-444, gnl|mm7|chr1 (152811098-152810991) | |
| 326-444, gnl|Mm7|chr1 (152811070-152810952) | |
| 326-444, gnl|monDom2|scaffold_16 (37503142-37503250) | |
| 326-444, gnl|oryCun1|scaffold_183328 (12872-12772) | |
| 326-444, gnl|panTro1|chr1 (162805335-162805444) | |
| 326-444, gnl|rheMac2|chr1 (187109124-187109015) | |
| 326-444, gnl|rn3|chr13 (67861778-67861671) | |
| 326-444, gnl|tetNig1|chr15_random (41523-41446) | |
| 326-444, gnl|xenTro1|scaffold_126 (651340-651433) | |
| 445-1139, gnl|bosTau2|chr16 (46275466-46276158) | |
| 445-1139, gnl|Hg17|chr1 (180242861-180243548) | |
| 445-1139, gnl|Mm7|chr1 (152810093-152809452) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-199, gnl|bosTau2|chr16 (46268733-46268897) | |
| 37-199, gnl|Hg17|chr1 (180234460-180234624) | |
| 37-199, gnl|Mm7|chr1 (152817080-152816919) | |
| 326-444, gnl|bosTau2|chr16 (46274690-46274808) | |
| 326-444, gnl|canFam2|chr7 (19860179-19860287) | |
| 326-444, gnl|dasNov1|scaffold_505 (173025-172925) | |
| 326-444, gnl|echTel1|scaffold_312347 (18099-17997) | |
| 326-444, gnl|fr1|chrUn (307404139-307404219) | |
| 326-444, gnl|galGal2|chr8 (7595852-7595959) | |
| 326-444, gnl|hg17|chr1 (180241742-180241851) | |
| 326-444, gnl|Hg17|chr1 (180241770-180241888) | |
| 326-444, gnl|loxAfr1|scaffold_14266 (36061-36169) | |
| 326-444, gnl|mm7|chr1 (152811098-152810991) | |
| 326-444, gnl|Mm7|chr1 (152811070-152810952) | |
| 326-444, gnl|monDom2|scaffold_16 (37503142-37503250) | |
| 326-444, gnl|oryCun1|scaffold_183328 (12872-12772) | |
| 326-444, gnl|panTro1|chr1 (162805335-162805444) | |
| 326-444, gnl|rheMac2|chr1 (187109124-187109015) | |
| 326-444, gnl|rn3|chr13 (67861778-67861671) | |
| 326-444, gnl|tetNig1|chr15_random (41523-41446) | |
| 326-444, gnl|xenTro1|scaffold_126 (651340-651433) | |
| 445-1139, gnl|bosTau2|chr16 (46275466-46276158) | |
| 445-1139, gnl|Hg17|chr1 (180242861-180243548) | |
| 445-1139, gnl|Mm7|chr1 (152810093-152809452) |