Non-Coding RNA Search

Ss1.1-Pig4-TMW8038F06.3

Sequence:


               
               CTTTACTCCCACTGTGTCACTGCG------------------------------------
------------------------------------------------------------
------------------------TCTCTGGCCCAGGAAATTTCATATGCCACAGGTACA
GCAACAACAACAATACACACACACACACACACACATGCGTGTGCACACACACACGTATAT
ATACAAACATATACATATATATATGCATATATACATATATATGTGTTTGTATATATATAT
GCTTAGGCAATTCCCTGATAGTCTGGTGATTAGGACTTGGCACTTTGGCACTTTCATAGG
TGTGGCCTGGGTTCAATGGCACACTGCAGCCTATATAAGCTTAGACCACAGCCTAGACCT
ACATAATTAAAAATCTCTACTAGTGGTACTCAAGCAACTACTTTTTTAAAAGGATCTATA
GAAGATTCTGGTGCATACCAAAGCTAAAAAAACCATTTCTTTAGAAAAATGTCAATTCAT
TAAATGTTGATTTTCTTCCTCGATGAGGGTATCAATTTATTGCCTTTTTCCCTTTCCATG
TTGCACACGGACTCAGAGCATAACACACATGCACGCGTACACGCACGCACGCACACACAC
ACACACACTTTTTAGTTCTGCCCTTGAATTAAAACTTGATGGTGGTAAAATCTGATAGTA
GGAAAGAAACGCTTCACTGAGAAACATGCAAGGACTTGCAATTCATTCCCACTGTGCCTG
AAGCAAATGGCTGTTTCCCATTTGCCAGAATGGAATGGTTTAAATATGCATTTCCAATTT
GGAAACAGGTAAAATCAGCACTTCTTGGGAAACATCAGCTAAGTGGATGCTAGGAAACAA
AAGTGAGCAAGGTTACAGCAGCCAACCATGAAAAAAAGCTACAGGGACTCCTCCTCCATT
TGGACACTGCCTGCATCTCAGGCAACACCTTGGGAATTGAAAGGATGTATGCGTAGCAGG
CACCAAACATGTGGGTGCTTCATCAAGGGAAACACAATCATGAAAACTGGTGACTGTCAT
TATAATATTATTTTTTAAAAATGATTGGTTTGTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTACTCCCACTGTGTCACTGCG------------------------------------
------------------------------------------------------------
------------------------TCTCTGGCCCAGGAAATTTCATATGCCACAGGTACA
GCAACAACAACAATACACACACACACACACACACATGCGTGTGCACACACACACGTATAT
ATACAAACATATACATATATATATGCATATATACATATATATGTGTTTGTATATATATAT
GCTTAGGCAATTCCCTGATAGTCTGGTGATTAGGACTTGGCACTTTGGCACTTTCATAGG
TGTGGCCTGGGTTCAATGGCACACTGCAGCCTATATAAGCTTAGACCACAGCCTAGACCT
ACATAATTAAAAATCTCTACTAGTGGTACTCAAGCAACTACTTTTTTAAAAGGATCTATA
GAAGATTCTGGTGCATACCAAAGCTAAAAAAACCATTTCTTTAGAAAAATGTCAATTCAT
TAAATGTTGATTTTCTTCCTCGATGAGGGTATCAATTTATTGCCTTTTTCCCTTTCCATG
TTGCACACGGACTCAGAGCATAACACACATGCACGCGTACACGCACGCACGCACACACAC
ACACACACTTTTTAGTTCTGCCCTTGAATTAAAACTTGATGGTGGTAAAATCTGATAGTA
GGAAAGAAACGCTTCACTGAGAAACATGCAAGGACTTGCAATTCATTCCCACTGTGCCTG
AAGCAAATGGCTGTTTCCCATTTGCCAGAATGGAATGGTTTAAATATGCATTTCCAATTT
GGAAACAGGTAAAATCAGCACTTCTTGGGAAACATCAGCTAAGTGGATGCTAGGAAACAA
AAGTGAGCAAGGTTACAGCAGCCAACCATGAAAAAAAGCTACAGGGACTCCTCCTCCATT
TGGACACTGCCTGCATCTCAGGCAACACCTTGGGAATTGAAAGGATGTATGCGTAGCAGG
CACCAAACATGTGGGTGCTTCATCAAGGGAAACACAATCATGAAAACTGGTGACTGTCAT
TATAATATTATTTTTTAAAAATGATTGGTTTGTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               720-872, - strand, RNAz p=0.919747

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               720-872, - strand, RNAz p=0.919747

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_194298, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_194298, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               272-443, gnl|bosTau2|chr28 (11413011-11412841)
               

               
               272-443, gnl|Hg17|chr10 (61081259-61081430)
               


               
               444-994, gnl|bosTau2|chr28 (11412810-11412270)
               

               
               444-994, gnl|Hg17|chr10 (61081461-61082004)
               

               
               444-994, gnl|Mm7|chr10 (69887268-69886799)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-443, gnl|bosTau2|chr28 (11413011-11412841)
               

               
               272-443, gnl|Hg17|chr10 (61081259-61081430)
               


               
               444-994, gnl|bosTau2|chr28 (11412810-11412270)
               

               
               444-994, gnl|Hg17|chr10 (61081461-61082004)
               

               
               444-994, gnl|Mm7|chr10 (69887268-69886799)

	272-443, gnl\|bosTau2\|chr28 (11413011-11412841)
	272-443, gnl\|Hg17\|chr10 (61081259-61081430)

	444-994, gnl\|bosTau2\|chr28 (11412810-11412270)
	444-994, gnl\|Hg17\|chr10 (61081461-61082004)
	444-994, gnl\|Mm7\|chr10 (69887268-69886799)