Non-Coding RNA Search

Ss1.1-Pig4-TMW8038G23.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTGCCTCTCTCCTTTCTTCCCACCTTTCTTTCCTTTATCCCTT
TTCTTTCCTTATCTGCTTTTCCCCTTGAGCAGCTTCAGTAATTGATCTTTTATCTTAGAG
AGAGAGAAACAGAGAGAGAGAGAGAGACTGGTTTCTATGCCAGCGCTCCTGAAACCTCTC
ACTGTAAGGCTATTTTCCCTTACCCCTTGGGATCCAGGCTCTGAACCTCTTCTTCTCTTT
GGGAGTATCCATCAAAATGACTTTTTTTACAGACATTATTCCCCCTCCAGAAGAATCTGT
GCAAACATGGCAGCGTTTTTACTTGTTTAATGAGCTTAAGACATTACATGATGAAAGGGA
AGCATTTCGGACTCCTGCATTTTTATTTACAACCCCAGACTGACAAAAAAAGAAAAAAGA
AAGAAAAGAAAGAGAAACCCTCACATAACAGCCCTTCTCTAAAGGAAAAGGAAAAATCGG
CTGTAAGATTAGAACGTTGCCACAAAAGGAACGCTGCATGTTTTATCAGAATGCAATGAG
CAAGAATGAGGATTTAAACAAACAAAACCACTCTTTCCCCACCCCTACCCCAAAACCCTG
AACTGGAATCAGGAAAGACAGAGGAACAACCAAAATCTCATTCTGTTGCTTTGATATCTT
TACTAGGTGAATTGGTGGCATTCACTAAGCTAATAGGGACGTTTATATCAAGAAACATTT
CTGTATATATTGTTGAATTTTAGTTGTACATATACTTTGTATGTTTTTTGTCTTCTTTCA
TATATGGAGTAAAAGCCACAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTGCCTCTCTCCTTTCTTCCCACCTTTCTTTCCTTTATCCCTT
TTCTTTCCTTATCTGCTTTTCCCCTTGAGCAGCTTCAGTAATTGATCTTTTATCTTAGAG
AGAGAGAAACAGAGAGAGAGAGAGAGACTGGTTTCTATGCCAGCGCTCCTGAAACCTCTC
ACTGTAAGGCTATTTTCCCTTACCCCTTGGGATCCAGGCTCTGAACCTCTTCTTCTCTTT
GGGAGTATCCATCAAAATGACTTTTTTTACAGACATTATTCCCCCTCCAGAAGAATCTGT
GCAAACATGGCAGCGTTTTTACTTGTTTAATGAGCTTAAGACATTACATGATGAAAGGGA
AGCATTTCGGACTCCTGCATTTTTATTTACAACCCCAGACTGACAAAAAAAGAAAAAAGA
AAGAAAAGAAAGAGAAACCCTCACATAACAGCCCTTCTCTAAAGGAAAAGGAAAAATCGG
CTGTAAGATTAGAACGTTGCCACAAAAGGAACGCTGCATGTTTTATCAGAATGCAATGAG
CAAGAATGAGGATTTAAACAAACAAAACCACTCTTTCCCCACCCCTACCCCAAAACCCTG
AACTGGAATCAGGAAAGACAGAGGAACAACCAAAATCTCATTCTGTTGCTTTGATATCTT
TACTAGGTGAATTGGTGGCATTCACTAAGCTAATAGGGACGTTTATATCAAGAAACATTT
CTGTATATATTGTTGAATTTTAGTTGTACATATACTTTGTATGTTTTTTGTCTTCTTTCA
TATATGGAGTAAAAGCCACAAAAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               21-275, - strand, RNAz p=0.999871
               

               
               446-553, - strand, RNAz p=0.591117
               

               
               652-771, - strand, RNAz p=0.702487

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-275, - strand, RNAz p=0.999871
               

               
               446-553, - strand, RNAz p=0.591117
               

               
               652-771, - strand, RNAz p=0.702487

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               148-261, BX115138 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone 
(emb|BX115138.1|), blast E-value=4e-31, identity=91.23% 
               

               
               148-261, EST12816 Uterus tumor I Homo sapiens cDNA 5' end, mRNA sequence 
(gb|AA300186.1|), blast E-value=4e-31, identity=91.23% 
               

               
               148-261, wm09h05.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AI859314.1|), 
blast E-value=4e-31, identity=91.23% 
               

               
               152-257, 488942 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM030326.1|), 
blast E-value=1e-34, identity=93.4% 
               

               
               148-257, 1263068 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520329.1|), 
blast E-value=1e-34, identity=92.73% 
               

               
               148-257, LB02548.CR_D05 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344519.1|), 
blast E-value=4e-37, identity=93.64%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               148-261, BX115138 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone 
(emb|BX115138.1|), blast E-value=4e-31, identity=91.23% 
               

               
               148-261, EST12816 Uterus tumor I Homo sapiens cDNA 5' end, mRNA sequence 
(gb|AA300186.1|), blast E-value=4e-31, identity=91.23% 
               

               
               148-261, wm09h05.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb|AI859314.1|), 
blast E-value=4e-31, identity=91.23% 
               

               
               152-257, 488942 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM030326.1|), 
blast E-value=1e-34, identity=93.4% 
               

               
               148-257, 1263068 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520329.1|), 
blast E-value=1e-34, identity=92.73% 
               

               
               148-257, LB02548.CR_D05 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344519.1|), 
blast E-value=4e-37, identity=93.64%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-801, gnl|bosTau2|chr4 (3222487-3223286)
               

               
               7-801, gnl|Hg17|chr7 (96284211-96284995)
               

               
               7-801, gnl|Mm7|chr6 (6820372-6821434)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-801, gnl|bosTau2|chr4 (3222487-3223286)
               

               
               7-801, gnl|Hg17|chr7 (96284211-96284995)
               

               
               7-801, gnl|Mm7|chr6 (6820372-6821434)

	21-275, - strand, RNAz p=0.999871
	446-553, - strand, RNAz p=0.591117
	652-771, - strand, RNAz p=0.702487

	148-261, BX115138 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone (emb\|BX115138.1\|), blast E-value=4e-31, identity=91.23%
	148-261, EST12816 Uterus tumor I Homo sapiens cDNA 5' end, mRNA sequence (gb\|AA300186.1\|), blast E-value=4e-31, identity=91.23%
	148-261, wm09h05.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone IMAGE (gb\|AI859314.1\|), blast E-value=4e-31, identity=91.23%
	152-257, 488942 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM030326.1\|), blast E-value=1e-34, identity=93.4%
	148-257, 1263068 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN520329.1\|), blast E-value=1e-34, identity=92.73%
	148-257, LB02548.CR_D05 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE344519.1\|), blast E-value=4e-37, identity=93.64%

	7-801, gnl\|bosTau2\|chr4 (3222487-3223286)
	7-801, gnl\|Hg17\|chr7 (96284211-96284995)
	7-801, gnl\|Mm7\|chr6 (6820372-6821434)