Non-Coding RNA Search

Ss1.1-Pig4-TMW8038K13.5

Sequence:


               
               GAGGAATTAATGTTGGGCTGCTTCTGCTCCTCTCTCAAATCTACCATGTTGGGATCAATA
ATATTCCACCTGTCACCGTAGCAACTTTGGCTCTCAACATCTGGTTCTTCTTGAATCCTC
TGAAGCCGCTGTTTAGCTCCTGCCTTAGCGTGGAGAAGTGTTATCAGCAAAAAGACTGGC
AGCGCTTACTGCTCTCCCCTCTTCACCACGTAGATGACTGGCATTTGTATTTCAACATGG
CATCCATGCTATGGAAAGGAATAAATTTGGAAAGAAGACTAGGAAGTAGATGGTTTGCCT
ACATCATCGCCACATTCTCTCTACTCACTGGGGTGGTGTACCTGCTCTTGGAATTTGCTC
TTGCAGAATTGCTGGATGAACCTGGCTTCAGAAGGAACTGTGCTGTAGGTTTCTCAGGTA
TTTTGTTTGCTTTGAAAGTTCTTAACAACCATTATTGCCCTGCAGGCTTTGCCAACGTTT
TGGGCTTTCCTGTACCCAACATATTTGCATGTTGGGCACAACTTTTGGCTATTCACTTCA
TCTCACCAGGGACCTCCTTCGCCGAGCTGATGGGAGGACAGGAATGGGGACATAGATTTT
GCTGTCTCCCAGTATGCTATATCTTTCACTCTTAGGCAATTTAGACTAGAGTCTGCCCAA
AGATAGTTTTGTAGGAGACATAGTCCTGGAAATGTGCAATCGCTTTATCATGGCGGGACC
AGGGAAAGACACACTGGTGTATTTGTGGTAGGGAGTTGTCTAANAAGAGGAGTATACCTC
TTAAAAATGCCATTAAAATAAATACAGCATGTTCCCATGTTTTAGGAGCCATGATAGTCT
CTCTACATAATTCATGCTATTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAATTAATGTTGGGCTGCTTCTGCTCCTCTCTCAAATCTACCATGTTGGGATCAATA
ATATTCCACCTGTCACCGTAGCAACTTTGGCTCTCAACATCTGGTTCTTCTTGAATCCTC
TGAAGCCGCTGTTTAGCTCCTGCCTTAGCGTGGAGAAGTGTTATCAGCAAAAAGACTGGC
AGCGCTTACTGCTCTCCCCTCTTCACCACGTAGATGACTGGCATTTGTATTTCAACATGG
CATCCATGCTATGGAAAGGAATAAATTTGGAAAGAAGACTAGGAAGTAGATGGTTTGCCT
ACATCATCGCCACATTCTCTCTACTCACTGGGGTGGTGTACCTGCTCTTGGAATTTGCTC
TTGCAGAATTGCTGGATGAACCTGGCTTCAGAAGGAACTGTGCTGTAGGTTTCTCAGGTA
TTTTGTTTGCTTTGAAAGTTCTTAACAACCATTATTGCCCTGCAGGCTTTGCCAACGTTT
TGGGCTTTCCTGTACCCAACATATTTGCATGTTGGGCACAACTTTTGGCTATTCACTTCA
TCTCACCAGGGACCTCCTTCGCCGAGCTGATGGGAGGACAGGAATGGGGACATAGATTTT
GCTGTCTCCCAGTATGCTATATCTTTCACTCTTAGGCAATTTAGACTAGAGTCTGCCCAA
AGATAGTTTTGTAGGAGACATAGTCCTGGAAATGTGCAATCGCTTTATCATGGCGGGACC
AGGGAAAGACACACTGGTGTATTTGTGGTAGGGAGTTGTCTAANAAGAGGAGTATACCTC
TTAAAAATGCCATTAAAATAAATACAGCATGTTCCCATGTTTTAGGAGCCATGATAGTCT
CTCTACATAATTCATGCTATTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16041108|dbj|BAB69721.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16041108|dbj|BAB69721.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-218, - strand, RNAz p=0.645551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-218, - strand, RNAz p=0.645551

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-420, gnl|bosTau2|chr11 (51837256-51837675)
               

               
               1-420, gnl|canFam2|chr25 (42746232-42746504)
               

               
               1-420, gnl|dasNov1|scaffold_2328 (62872-62594)
               

               
               1-420, gnl|echTel1|scaffold_309713 (136273-136549)
               

               
               1-420, gnl|fr1|chrUn (241253825-241253536)
               

               
               1-420, gnl|galGal2|chr9 (4383605-4383327)
               

               
               1-420, gnl|Hg17|chr2 (227554931-227555350)
               

               
               1-420, gnl|hg17|chr6 (144760791-144761064)
               

               
               1-420, gnl|loxAfr1|scaffold_8807 (2791-3067)
               

               
               1-420, gnl|mm7|chr1 (82555244-82555519)
               

               
               1-420, gnl|Mm7|chr1 (82555107-82555526)
               

               
               1-420, gnl|monDom2|scaffold_28 (8351004-8351282)
               

               
               1-420, gnl|oryCun1|scaffold_208906 (54922-54646)
               

               
               1-420, gnl|panTro1|chr5 (147683836-147684109)
               

               
               1-420, gnl|rheMac2|chr4 (119280205-119279928)
               

               
               1-420, gnl|rn3|chr9 (81870284-81870559)
               

               
               1-420, gnl|tetNig1|chr16 (6350459-6350206)
               

               
               1-420, gnl|xenTro1|scaffold_340 (794558-794836)
               


               
               566-788, gnl|bosTau2|chr11 (51837822-51838042)
               

               
               566-788, gnl|Hg17|chr2 (227555485-227555674)
               

               
               566-788, gnl|Mm7|chr1 (82555643-82555835)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chr11 (51837256-51837675)
               

               
               1-420, gnl|canFam2|chr25 (42746232-42746504)
               

               
               1-420, gnl|dasNov1|scaffold_2328 (62872-62594)
               

               
               1-420, gnl|echTel1|scaffold_309713 (136273-136549)
               

               
               1-420, gnl|fr1|chrUn (241253825-241253536)
               

               
               1-420, gnl|galGal2|chr9 (4383605-4383327)
               

               
               1-420, gnl|Hg17|chr2 (227554931-227555350)
               

               
               1-420, gnl|hg17|chr6 (144760791-144761064)
               

               
               1-420, gnl|loxAfr1|scaffold_8807 (2791-3067)
               

               
               1-420, gnl|mm7|chr1 (82555244-82555519)
               

               
               1-420, gnl|Mm7|chr1 (82555107-82555526)
               

               
               1-420, gnl|monDom2|scaffold_28 (8351004-8351282)
               

               
               1-420, gnl|oryCun1|scaffold_208906 (54922-54646)
               

               
               1-420, gnl|panTro1|chr5 (147683836-147684109)
               

               
               1-420, gnl|rheMac2|chr4 (119280205-119279928)
               

               
               1-420, gnl|rn3|chr9 (81870284-81870559)
               

               
               1-420, gnl|tetNig1|chr16 (6350459-6350206)
               

               
               1-420, gnl|xenTro1|scaffold_340 (794558-794836)
               


               
               566-788, gnl|bosTau2|chr11 (51837822-51838042)
               

               
               566-788, gnl|Hg17|chr2 (227555485-227555674)
               

               
               566-788, gnl|Mm7|chr1 (82555643-82555835)

	1-420, gnl\|bosTau2\|chr11 (51837256-51837675)
	1-420, gnl\|canFam2\|chr25 (42746232-42746504)
	1-420, gnl\|dasNov1\|scaffold_2328 (62872-62594)
	1-420, gnl\|echTel1\|scaffold_309713 (136273-136549)
	1-420, gnl\|fr1\|chrUn (241253825-241253536)
	1-420, gnl\|galGal2\|chr9 (4383605-4383327)
	1-420, gnl\|Hg17\|chr2 (227554931-227555350)
	1-420, gnl\|hg17\|chr6 (144760791-144761064)
	1-420, gnl\|loxAfr1\|scaffold_8807 (2791-3067)
	1-420, gnl\|mm7\|chr1 (82555244-82555519)
	1-420, gnl\|Mm7\|chr1 (82555107-82555526)
	1-420, gnl\|monDom2\|scaffold_28 (8351004-8351282)
	1-420, gnl\|oryCun1\|scaffold_208906 (54922-54646)
	1-420, gnl\|panTro1\|chr5 (147683836-147684109)
	1-420, gnl\|rheMac2\|chr4 (119280205-119279928)
	1-420, gnl\|rn3\|chr9 (81870284-81870559)
	1-420, gnl\|tetNig1\|chr16 (6350459-6350206)
	1-420, gnl\|xenTro1\|scaffold_340 (794558-794836)

	566-788, gnl\|bosTau2\|chr11 (51837822-51838042)
	566-788, gnl\|Hg17\|chr2 (227555485-227555674)
	566-788, gnl\|Mm7\|chr1 (82555643-82555835)