Ss1.1-Pig4-TMW8038L15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACACTGGGGTTTCTTGTGAATTTTTGCATGTCAGTGCTGCCTGGGTCTGGTAGAAGAC TGCTCCACTTAAACCTACATATTTTGAATCATTCTTTTTCCTTTGTTTAAAACAATTAAT CAATTTGATACCTTTTTTTGTGTGGCCATAGGTCTTTTCTCCCCATATCAATCTTTTCTT TTTAAGGCAGCATCCCAAAATATGCTTCTTATGGATTAAAAACCCTAATTACAAATGTTA TAGGGATTTAGGCTATCAAATATCTATATCTATATCTGTATCTATCTATATATCTCCTAT AACAACACAGTATTGGTCCTTTGGATACACACACACACACACACATGCACACACATACAC ATATATGTGTGTATATATATGTAATTTTTTCTTATACATGTTGGAAAAGGATTTATGATA AAGTAACTGGACAAAATTAAATAGTTTACCTTAAATGTCACCCACACAGGTCACCTCTCT AATGGCCACAGCCCCAGGAGCAGATGAATTTAACACGGGTGTTGAATATGTTGTAGCCTG TGAATCATCTTGTCACTGTCAATTTTCTGGGATATCTCTATTTTGCAAGAAAAGAAAGTT ATTCCTAATTCTGGATGCGTCTGGGGGTCTCTGGAGGACAATTGCCCTGTGTTTCCCCTA TTTGGAAGTTTGGATCTCACAAGGGGGGTGGATTGCACTTGTCATTGTCATTTATGAACT CCTGATTATATTTCCATTTTTTTATTTCTTTCATAATGTAGGTACACGAATTATGTGACA ATTTCTGCCACCGGTATATTAGCTGTTTGAAAGGGAAAATGCCTATCGATTTGGTGATAG ACGATAGAGAAGGAGGATCAAAATCAGACAGTGAAGATATAACAAGATCAGCAAATCTAA CCGACCAGGTATGTGCTTTTCAATTTCAACATCCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACACTGGGGTTTCTTGTGAATTTTTGCATGTCAGTGCTGCCTGGGTCTGGTAGAAGAC TGCTCCACTTAAACCTACATATTTTGAATCATTCTTTTTCCTTTGTTTAAAACAATTAAT CAATTTGATACCTTTTTTTGTGTGGCCATAGGTCTTTTCTCCCCATATCAATCTTTTCTT TTTAAGGCAGCATCCCAAAATATGCTTCTTATGGATTAAAAACCCTAATTACAAATGTTA TAGGGATTTAGGCTATCAAATATCTATATCTATATCTGTATCTATCTATATATCTCCTAT AACAACACAGTATTGGTCCTTTGGATACACACACACACACACACATGCACACACATACAC ATATATGTGTGTATATATATGTAATTTTTTCTTATACATGTTGGAAAAGGATTTATGATA AAGTAACTGGACAAAATTAAATAGTTTACCTTAAATGTCACCCACACAGGTCACCTCTCT AATGGCCACAGCCCCAGGAGCAGATGAATTTAACACGGGTGTTGAATATGTTGTAGCCTG TGAATCATCTTGTCACTGTCAATTTTCTGGGATATCTCTATTTTGCAAGAAAAGAAAGTT ATTCCTAATTCTGGATGCGTCTGGGGGTCTCTGGAGGACAATTGCCCTGTGTTTCCCCTA TTTGGAAGTTTGGATCTCACAAGGGGGGTGGATTGCACTTGTCATTGTCATTTATGAACT CCTGATTATATTTCCATTTTTTTATTTCTTTCATAATGTAGGTACACGAATTATGTGACA ATTTCTGCCACCGGTATATTAGCTGTTTGAAAGGGAAAATGCCTATCGATTTGGTGATAG ACGATAGAGAAGGAGGATCAAAATCAGACAGTGAAGATATAACAAGATCAGCAAATCTAA CCGACCAGGTATGTGCTTTTCAATTTCAACATCCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 411-529, - strand, RNAz p=0.63568 | |
| 808-927, - strand, RNAz p=0.900438 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 411-529, - strand, RNAz p=0.63568 | |
| 808-927, - strand, RNAz p=0.900438 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-267, gnl|bosTau2|chr11 (47050683-47050415) | |
| 1-267, gnl|Hg17|chr2 (66580946-66581243) | |
| 356-936, gnl|bosTau2|chr11 (47050388-47049806) | |
| 356-936, gnl|Hg17|chr2 (66581270-66581859) | |
| 356-936, gnl|Mm7|chr11 (18963828-18963223) | |
| 759-914, gnl|bosTau2|chr10 (18798500-18798342) | |
| 759-914, gnl|canFam2|chr30 (7609581-7609752) | |
| 759-914, gnl|danRer3|chr9 (5961113-5961284) | |
| 759-914, gnl|dasNov1|scaffold_343 (60826-60656) | |
| 759-914, gnl|echTel1|scaffold_302789 (50082-50251) | |
| 759-914, gnl|fr1|chrUn (64731233-64731063) | |
| 759-914, gnl|galGal2|chr5 (28115712-28115538) | |
| 759-914, gnl|hg17|chr15 (35173057-35173227) | |
| 759-914, gnl|Hg17|chr15 (35173226-35173068) | |
| 759-914, gnl|loxAfr1|scaffold_130503 (598-437) | |
| 759-914, gnl|mm7|chr2 (115799461-115799632) | |
| 759-914, gnl|Mm7|chr2 (115799631-115799473) | |
| 759-914, gnl|monDom2|scaffold_12 (6760142-6759971) | |
| 759-914, gnl|oryCun1|scaffold_210526 (79782-79612) | |
| 759-914, gnl|panTro1|chr16 (34978211-34978381) | |
| 759-914, gnl|rheMac2|chr7 (15424265-15424435) | |
| 759-914, gnl|rn3|chr3 (102007120-102007291) | |
| 759-914, gnl|tetNig1|chr10 (7625887-7625729) | |
| 759-914, gnl|xenTro1|scaffold_199 (97758-97590) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-267, gnl|bosTau2|chr11 (47050683-47050415) | |
| 1-267, gnl|Hg17|chr2 (66580946-66581243) | |
| 356-936, gnl|bosTau2|chr11 (47050388-47049806) | |
| 356-936, gnl|Hg17|chr2 (66581270-66581859) | |
| 356-936, gnl|Mm7|chr11 (18963828-18963223) | |
| 759-914, gnl|bosTau2|chr10 (18798500-18798342) | |
| 759-914, gnl|canFam2|chr30 (7609581-7609752) | |
| 759-914, gnl|danRer3|chr9 (5961113-5961284) | |
| 759-914, gnl|dasNov1|scaffold_343 (60826-60656) | |
| 759-914, gnl|echTel1|scaffold_302789 (50082-50251) | |
| 759-914, gnl|fr1|chrUn (64731233-64731063) | |
| 759-914, gnl|galGal2|chr5 (28115712-28115538) | |
| 759-914, gnl|hg17|chr15 (35173057-35173227) | |
| 759-914, gnl|Hg17|chr15 (35173226-35173068) | |
| 759-914, gnl|loxAfr1|scaffold_130503 (598-437) | |
| 759-914, gnl|mm7|chr2 (115799461-115799632) | |
| 759-914, gnl|Mm7|chr2 (115799631-115799473) | |
| 759-914, gnl|monDom2|scaffold_12 (6760142-6759971) | |
| 759-914, gnl|oryCun1|scaffold_210526 (79782-79612) | |
| 759-914, gnl|panTro1|chr16 (34978211-34978381) | |
| 759-914, gnl|rheMac2|chr7 (15424265-15424435) | |
| 759-914, gnl|rn3|chr3 (102007120-102007291) | |
| 759-914, gnl|tetNig1|chr10 (7625887-7625729) | |
| 759-914, gnl|xenTro1|scaffold_199 (97758-97590) |