Non-Coding RNA Search

Ss1.1-Pig4-TMW8038L22.3

Sequence:


               
               GAGCTGTATTTTGAGTTGGAGGCTGGAGGAGAGGATGCTAACTAGCCAGCCTTCCTGAGG
TGGGCTGGTTTGCAAAGGCTGCGCTAATTGGCGAGATTATTCTCCAGCATGATCAACTGC
AGGAAAAACAAAAGGAATTAGCTGCCACTCAGGACTTATCTCCTGGGCAAACATTCTTCG
CAAGAGAAATGAATGGATAGCAGTTGCCTGTTAAATGAAAAAGCTGAAGCTGAGGAAGGA
GAGGGAACTGGCAAAAGACGGTTACACTTGGGAAGCGCATCCATGTATCCACGAATTATA
CTTTTCACCTGGCCTTATAGTCATTGCTTTAAATGACTCTTCCAGATTCCTGGGTTCCTC
AATTCGTGGATTCTACCAACAGATCAAATATTTGAAAAAAATTCCAGAAAGTTCCACAAA
GCAAAAATTAAATTCACCCATTCCAGATTAGGAAATTGAGGACCAGAGAGCTTGAGTAAT
TTTTCTGAGATCGCAGAACCAATAAGTGGGAAAGCTGAGATTCAGACTCAGACTCCAGAT
CTCATGCTCTTCAACACTATATGAAAGAAGGAAAGAAAGAAGAGAGAAGGAAAGTAAGAG
AGAAGAAAAGGAAGAGAGAGAAGGAACGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGG
AAGGAAGGAAGGAAAGGCAGAAAGGAAGAAAAGAAGAGAAAAAGGGAGGGAGAAGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGTATTTTGAGTTGGAGGCTGGAGGAGAGGATGCTAACTAGCCAGCCTTCCTGAGG
TGGGCTGGTTTGCAAAGGCTGCGCTAATTGGCGAGATTATTCTCCAGCATGATCAACTGC
AGGAAAAACAAAAGGAATTAGCTGCCACTCAGGACTTATCTCCTGGGCAAACATTCTTCG
CAAGAGAAATGAATGGATAGCAGTTGCCTGTTAAATGAAAAAGCTGAAGCTGAGGAAGGA
GAGGGAACTGGCAAAAGACGGTTACACTTGGGAAGCGCATCCATGTATCCACGAATTATA
CTTTTCACCTGGCCTTATAGTCATTGCTTTAAATGACTCTTCCAGATTCCTGGGTTCCTC
AATTCGTGGATTCTACCAACAGATCAAATATTTGAAAAAAATTCCAGAAAGTTCCACAAA
GCAAAAATTAAATTCACCCATTCCAGATTAGGAAATTGAGGACCAGAGAGCTTGAGTAAT
TTTTCTGAGATCGCAGAACCAATAAGTGGGAAAGCTGAGATTCAGACTCAGACTCCAGAT
CTCATGCTCTTCAACACTATATGAAAGAAGGAAAGAAAGAAGAGAGAAGGAAAGTAAGAG
AGAAGAAAAGGAAGAGAGAGAAGGAACGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGG
AAGGAAGGAAGGAAAGGCAGAAAGGAAGAAAAGAAGAGAAAAAGGGAGGGAGAAGGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-130, + strand, RNAz p=0.993464

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-130, + strand, RNAz p=0.993464

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-130, gnl|bosTau2|chr9 (41267879-41268007)
               

               
               1-130, gnl|canFam2|chr1 (28999546-29000180)
               

               
               1-130, gnl|dasNov1|scaffold_8228 (2081-2718)
               

               
               1-130, gnl|echTel1|scaffold_281701 (60003-59419)
               

               
               1-130, gnl|galGal2|chr3 (55607028-55606279)
               

               
               1-130, gnl|hg17|chr6 (133314984-133315625)
               

               
               1-130, gnl|Hg17|chr6 (133315301-133315433)
               

               
               1-130, gnl|loxAfr1|scaffold_60711 (7634-6997)
               

               
               1-130, gnl|mm7|chr10 (23386325-23385749)
               

               
               1-130, gnl|Mm7|chr10 (23386065-23385936)
               

               
               1-130, gnl|monDom2|scaffold_0 (78303956-78303322)
               

               
               1-130, gnl|oryCun1|scaffold_163137 (19453-18825)
               

               
               1-130, gnl|panTro1|chr5 (135961400-135962041)
               

               
               1-130, gnl|rheMac2|chr4 (130936536-130935895)
               

               
               1-130, gnl|rn3|chr1 (22450278-22450877)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-130, gnl|bosTau2|chr9 (41267879-41268007)
               

               
               1-130, gnl|canFam2|chr1 (28999546-29000180)
               

               
               1-130, gnl|dasNov1|scaffold_8228 (2081-2718)
               

               
               1-130, gnl|echTel1|scaffold_281701 (60003-59419)
               

               
               1-130, gnl|galGal2|chr3 (55607028-55606279)
               

               
               1-130, gnl|hg17|chr6 (133314984-133315625)
               

               
               1-130, gnl|Hg17|chr6 (133315301-133315433)
               

               
               1-130, gnl|loxAfr1|scaffold_60711 (7634-6997)
               

               
               1-130, gnl|mm7|chr10 (23386325-23385749)
               

               
               1-130, gnl|Mm7|chr10 (23386065-23385936)
               

               
               1-130, gnl|monDom2|scaffold_0 (78303956-78303322)
               

               
               1-130, gnl|oryCun1|scaffold_163137 (19453-18825)
               

               
               1-130, gnl|panTro1|chr5 (135961400-135962041)
               

               
               1-130, gnl|rheMac2|chr4 (130936536-130935895)
               

               
               1-130, gnl|rn3|chr1 (22450278-22450877)

	1-130, gnl\|bosTau2\|chr9 (41267879-41268007)
	1-130, gnl\|canFam2\|chr1 (28999546-29000180)
	1-130, gnl\|dasNov1\|scaffold_8228 (2081-2718)
	1-130, gnl\|echTel1\|scaffold_281701 (60003-59419)
	1-130, gnl\|galGal2\|chr3 (55607028-55606279)
	1-130, gnl\|hg17\|chr6 (133314984-133315625)
	1-130, gnl\|Hg17\|chr6 (133315301-133315433)
	1-130, gnl\|loxAfr1\|scaffold_60711 (7634-6997)
	1-130, gnl\|mm7\|chr10 (23386325-23385749)
	1-130, gnl\|Mm7\|chr10 (23386065-23385936)
	1-130, gnl\|monDom2\|scaffold_0 (78303956-78303322)
	1-130, gnl\|oryCun1\|scaffold_163137 (19453-18825)
	1-130, gnl\|panTro1\|chr5 (135961400-135962041)
	1-130, gnl\|rheMac2\|chr4 (130936536-130935895)
	1-130, gnl\|rn3\|chr1 (22450278-22450877)