Ss1.1-Pig4-TMW8038N10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAGAGGAGTAACGAGTCGGGCACCCGGAGGGGTAAAAATATTTCCATCATGGCTCATT CAAAGACAAGGACCAATGATGGAAAAATTACCTATCCTCCTGGTGTCAAAGAAATCTCAG ATAAAATATCTAAAGAGGAGATGGTTAGACGGTTAAAGATGGTTGTGAAAACTTTCATGG ATATGGACCAGGACTCTGAAGAAGAAAAGGAGCTTTATTTAAACCTAGCTTTACATCTTG CTTCAGATTTTTTCCTCAAGCATCCTGATAAAGATGTTCGCTTACTGGTAGCTTGCTGCC TTGCTGATATTTTCAGGATTTATGCTCCTGAGGCTCCTTACACATCCCCTGATAAACTAA AGGATATATTTATGTTTATAACAAGGCAGTTGAAGGGACTAGAAGATACAAAGAGCCCAC AATTCAATAGGTATTTTTATTTACTTGAGAATATTGCTTGGGTCAAGTCATATAACATAT GCTTTGAGTTGGAAGATAGCAATGAAATTTTTACCCAGTTATACAGAACATTATTTTCAG TTATAAATAATGGCCACAATCAGAAAGTTCATATGCACATGGTGGACCTCATGAGTTCTA TTATTTGTGAAGGGGATACAGTATCTCAGGAGCTTTTGGATACAGTTTTGGTAAATCTGG TACCTGCCCATAAGAATTTAAATAAGCAAGCATATGATTTGGCAAAGGCTTTACTGAAGA GGACAGCTCAAGCTATTGAACCATATATTACCAATTTTTTTAATCAGGTTCTGATGCTTG GGAAAACATCTATCAGCGATTTGTCAGAGCATGTCTTTGACTTAATTTTGGAGCTCTATA ATATTGATAGTCATTTGCTGCTCTCAGTTTTACCCCAGCTTGAATTTAAATTGAAGAGCA ATGATAATGAGGAACGCCTTCAAGTTGTTAAACTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAGAGGAGTAACGAGTCGGGCACCCGGAGGGGTAAAAATATTTCCATCATGGCTCATT CAAAGACAAGGACCAATGATGGAAAAATTACCTATCCTCCTGGTGTCAAAGAAATCTCAG ATAAAATATCTAAAGAGGAGATGGTTAGACGGTTAAAGATGGTTGTGAAAACTTTCATGG ATATGGACCAGGACTCTGAAGAAGAAAAGGAGCTTTATTTAAACCTAGCTTTACATCTTG CTTCAGATTTTTTCCTCAAGCATCCTGATAAAGATGTTCGCTTACTGGTAGCTTGCTGCC TTGCTGATATTTTCAGGATTTATGCTCCTGAGGCTCCTTACACATCCCCTGATAAACTAA AGGATATATTTATGTTTATAACAAGGCAGTTGAAGGGACTAGAAGATACAAAGAGCCCAC AATTCAATAGGTATTTTTATTTACTTGAGAATATTGCTTGGGTCAAGTCATATAACATAT GCTTTGAGTTGGAAGATAGCAATGAAATTTTTACCCAGTTATACAGAACATTATTTTCAG TTATAAATAATGGCCACAATCAGAAAGTTCATATGCACATGGTGGACCTCATGAGTTCTA TTATTTGTGAAGGGGATACAGTATCTCAGGAGCTTTTGGATACAGTTTTGGTAAATCTGG TACCTGCCCATAAGAATTTAAATAAGCAAGCATATGATTTGGCAAAGGCTTTACTGAAGA GGACAGCTCAAGCTATTGAACCATATATTACCAATTTTTTTAATCAGGTTCTGATGCTTG GGAAAACATCTATCAGCGATTTGTCAGAGCATGTCTTTGACTTAATTTTGGAGCTCTATA ATATTGATAGTCATTTGCTGCTCTCAGTTTTACCCCAGCTTGAATTTAAATTGAAGAGCA ATGATAATGAGGAACGCCTTCAAGTTGTTAAACTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 154-352, + strand, RNAz p=0.973507 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 154-352, + strand, RNAz p=0.973507 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 154-363, gnl|bosTau2|chr11 (44310071-44309862) | |
| 154-363, gnl|canFam2|chr25 (10507730-10507488) | |
| 154-363, gnl|danRer3|chr15 (33090644-33090873) | |
| 154-363, gnl|dasNov1|scaffold_14782 (5635-5878) | |
| 154-363, gnl|echTel1|scaffold_233672 (3624-3864) | |
| 154-363, gnl|fr1|chrUn (234034547-234034303) | |
| 154-363, gnl|galGal2|chr1 (166507239-166506992) | |
| 154-363, gnl|hg17|chr13 (32123929-32124171) | |
| 154-363, gnl|Hg17|chr13 (32123936-32124145) | |
| 154-363, gnl|loxAfr1|scaffold_1565 (87371-87128) | |
| 154-363, gnl|mm7|chr5 (149652896-149653138) | |
| 154-363, gnl|Mm7|chr5 (149652903-149653112) | |
| 154-363, gnl|monDom2|scaffold_15 (43104731-43104979) | |
| 154-363, gnl|oryCun1|scaffold_178630 (30916-30673) | |
| 154-363, gnl|panTro1|chr14 (31319790-31320032) | |
| 154-363, gnl|rheMac2|chr17 (12014761-12015003) | |
| 154-363, gnl|rn3|chr12 (4124276-4124036) | |
| 154-363, gnl|tetNig1|chr7 (2459079-2459287) | |
| 154-363, gnl|xenTro1|scaffold_384 (1013179-1012941) | |
| 533-674, gnl|bosTau2|chr11 (44306858-44306718) | |
| 533-674, gnl|Hg17|chr13 (32131277-32131417) | |
| 533-674, gnl|Mm7|chr5 (149656316-149656456) | |
| 753-896, gnl|bosTau2|chr11 (44295253-44295110) | |
| 753-896, gnl|Hg17|chr13 (32145350-32145493) | |
| 753-896, gnl|Mm7|chr5 (149669361-149669504) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-363, gnl|bosTau2|chr11 (44310071-44309862) | |
| 154-363, gnl|canFam2|chr25 (10507730-10507488) | |
| 154-363, gnl|danRer3|chr15 (33090644-33090873) | |
| 154-363, gnl|dasNov1|scaffold_14782 (5635-5878) | |
| 154-363, gnl|echTel1|scaffold_233672 (3624-3864) | |
| 154-363, gnl|fr1|chrUn (234034547-234034303) | |
| 154-363, gnl|galGal2|chr1 (166507239-166506992) | |
| 154-363, gnl|hg17|chr13 (32123929-32124171) | |
| 154-363, gnl|Hg17|chr13 (32123936-32124145) | |
| 154-363, gnl|loxAfr1|scaffold_1565 (87371-87128) | |
| 154-363, gnl|mm7|chr5 (149652896-149653138) | |
| 154-363, gnl|Mm7|chr5 (149652903-149653112) | |
| 154-363, gnl|monDom2|scaffold_15 (43104731-43104979) | |
| 154-363, gnl|oryCun1|scaffold_178630 (30916-30673) | |
| 154-363, gnl|panTro1|chr14 (31319790-31320032) | |
| 154-363, gnl|rheMac2|chr17 (12014761-12015003) | |
| 154-363, gnl|rn3|chr12 (4124276-4124036) | |
| 154-363, gnl|tetNig1|chr7 (2459079-2459287) | |
| 154-363, gnl|xenTro1|scaffold_384 (1013179-1012941) | |
| 533-674, gnl|bosTau2|chr11 (44306858-44306718) | |
| 533-674, gnl|Hg17|chr13 (32131277-32131417) | |
| 533-674, gnl|Mm7|chr5 (149656316-149656456) | |
| 753-896, gnl|bosTau2|chr11 (44295253-44295110) | |
| 753-896, gnl|Hg17|chr13 (32145350-32145493) | |
| 753-896, gnl|Mm7|chr5 (149669361-149669504) |