Ss1.1-Pig4-TMW8038O21.3
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GATCAGCGAACAGTTCCGCGGGGACCGCCGCAGGCCGCGAGTCCACGGGGTGTCAGGAAC
TCCCCCTCCCCGGACCCTGGCCCCGGCTGAGGCAGCAACGGTTTGCCCGGGCCCTCCCCC
TTCCCTCCACCCCTGCGAATCTTCCTGGACCAGAGCGCGACACGCGCCTAGACCCGGGCG
TTCTCTCAAGCCTTGGGGCCGGGTGTTGCTGGCAATGCAGAAGAGGCAAAAGTGAAGAAA
ACGAAGACGAAGGGCAGCTGAATGGGAACGATTCGGGGGGTCTTCCCGGCTCCCAGCACC
CCCAAGAAGATGGCTGCCGATAAGTCTCGCGAGAACTAATGAAGTCTCGCGGTGGTTCCC
GGAGCCTGCTGGGAAGAGACGTAAGATTCGCAGAGAGCGTGCTGGGCAAGTGCGGTAGTT
CGAGTTTTGCGTAATTGCGTGGCTTGAGGGTTTTCATTCCTTGCTCCTCTTAAGGAAAAA
AGACTTTGGAGTTTTGTTTTGTTTTGTTTTGTTTTTACAAGGAAGGAAAGGCTGCTGACG
TCAGAAGCAGCGGGAACCCCAGCTTGTCCTCAGTAACAGACTGCCTGGCTCGTCAGCTGG
AAGGAACGTGTGGATGGGAGGGCTCCCTTGAGAGCGTCCACAAGGATATGCCGGAACGGC
GACCACCGGGGGGTTACAGGTGTGCTGCGCTGTGATGTGGACAAGATTGGGAAGAACGAG
CTGGTCTAATCTAACGCACTGAGATCTTCAGAGGATTAGTGTCTTGTCCAGAATTGCTCT
ACTTATGGGCAGAGCACTAATGATCCAGGGATTCCCCTAGCCCTTGACAGTTTCTCAAAT
AGTTTCCAACCATCTGAAACTTTCAGACTTCCCCAGCTAGAAATAAGAGAAGTGTCTATG
TTTTCAGTTCTCTCCAATTTAAAGCCAATTCAGCTCTATCGATAGGGAAAGTACGTAGTA
TCAAGAGAGAGCCTTCATATCAGCATCCTAAATCCATTAACTTCCTTTCTCCTGGCTGGC
CAAATAAGTTTAATTCCTGCCTCAGTTGTTCTATTTGCTGTTATTAACTGCCTAGTACCA
TTAAGGTACTAGGTAGAATTTTGCAAAAGGTCTAGCGCCCATGAACTATAATGAAATGAA
AATAATTCACACTATAAAGACACTTAAAAGTAAGCAGACCAATAAAAAGCTCCTTATGGC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GATCAGCGAACAGTTCCGCGGGGACCGCCGCAGGCCGCGAGTCCACGGGGTGTCAGGAAC
TCCCCCTCCCCGGACCCTGGCCCCGGCTGAGGCAGCAACGGTTTGCCCGGGCCCTCCCCC
TTCCCTCCACCCCTGCGAATCTTCCTGGACCAGAGCGCGACACGCGCCTAGACCCGGGCG
TTCTCTCAAGCCTTGGGGCCGGGTGTTGCTGGCAATGCAGAAGAGGCAAAAGTGAAGAAA
ACGAAGACGAAGGGCAGCTGAATGGGAACGATTCGGGGGGTCTTCCCGGCTCCCAGCACC
CCCAAGAAGATGGCTGCCGATAAGTCTCGCGAGAACTAATGAAGTCTCGCGGTGGTTCCC
GGAGCCTGCTGGGAAGAGACGTAAGATTCGCAGAGAGCGTGCTGGGCAAGTGCGGTAGTT
CGAGTTTTGCGTAATTGCGTGGCTTGAGGGTTTTCATTCCTTGCTCCTCTTAAGGAAAAA
AGACTTTGGAGTTTTGTTTTGTTTTGTTTTGTTTTTACAAGGAAGGAAAGGCTGCTGACG
TCAGAAGCAGCGGGAACCCCAGCTTGTCCTCAGTAACAGACTGCCTGGCTCGTCAGCTGG
AAGGAACGTGTGGATGGGAGGGCTCCCTTGAGAGCGTCCACAAGGATATGCCGGAACGGC
GACCACCGGGGGGTTACAGGTGTGCTGCGCTGTGATGTGGACAAGATTGGGAAGAACGAG
CTGGTCTAATCTAACGCACTGAGATCTTCAGAGGATTAGTGTCTTGTCCAGAATTGCTCT
ACTTATGGGCAGAGCACTAATGATCCAGGGATTCCCCTAGCCCTTGACAGTTTCTCAAAT
AGTTTCCAACCATCTGAAACTTTCAGACTTCCCCAGCTAGAAATAAGAGAAGTGTCTATG
TTTTCAGTTCTCTCCAATTTAAAGCCAATTCAGCTCTATCGATAGGGAAAGTACGTAGTA
TCAAGAGAGAGCCTTCATATCAGCATCCTAAATCCATTAACTTCCTTTCTCCTGGCTGGC
CAAATAAGTTTAATTCCTGCCTCAGTTGTTCTATTTGCTGTTATTAACTGCCTAGTACCA
TTAAGGTACTAGGTAGAATTTTGCAAAAGGTCTAGCGCCCATGAACTATAATGAAATGAA
AATAATTCACACTATAAAGACACTTAAAAGTAAGCAGACCAATAAAAAGCTCCTTATGGC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-697, gnl|bosTau2|chr12 (31085189-31084486) |
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1-697, gnl|Hg17|chr13 (78878054-78878733) |
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1-697, gnl|Mm7|chr14 (99606640-99607300) |
| |
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905-1200, gnl|bosTau2|chr12 (31084185-31083903) |
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905-1200, gnl|canFam2|chr22 (35615320-35615677) |
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905-1200, gnl|dasNov1|scaffold_61552 (6986-7314) |
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905-1200, gnl|hg17|chr13 (78878932-78879242) |
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905-1200, gnl|Hg17|chr13 (78879009-78879261) |
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905-1200, gnl|loxAfr1|scaffold_1700 (463-133) |
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905-1200, gnl|mm7|chr14 (99607492-99607801) |
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905-1200, gnl|Mm7|chr14 (99607561-99607819) |
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905-1200, gnl|oryCun1|scaffold_204822 (56079-56382) |
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905-1200, gnl|panTro1|chr14 (61535201-61535511) |
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905-1200, gnl|rheMac2|chr17 (59913708-59914014) |
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905-1200, gnl|rn3|chr15 (89261145-89261401) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-697, gnl|bosTau2|chr12 (31085189-31084486) |
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1-697, gnl|Hg17|chr13 (78878054-78878733) |
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1-697, gnl|Mm7|chr14 (99606640-99607300) |
| |
|
905-1200, gnl|bosTau2|chr12 (31084185-31083903) |
|
905-1200, gnl|canFam2|chr22 (35615320-35615677) |
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905-1200, gnl|dasNov1|scaffold_61552 (6986-7314) |
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905-1200, gnl|hg17|chr13 (78878932-78879242) |
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905-1200, gnl|Hg17|chr13 (78879009-78879261) |
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905-1200, gnl|loxAfr1|scaffold_1700 (463-133) |
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905-1200, gnl|mm7|chr14 (99607492-99607801) |
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905-1200, gnl|Mm7|chr14 (99607561-99607819) |
|
905-1200, gnl|oryCun1|scaffold_204822 (56079-56382) |
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905-1200, gnl|panTro1|chr14 (61535201-61535511) |
|
905-1200, gnl|rheMac2|chr17 (59913708-59914014) |
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905-1200, gnl|rn3|chr15 (89261145-89261401) |
