Non-Coding RNA Search

Ss1.1-Pig4-TMW8039C13.3

Sequence:


               
               TTTTAACCCACTGTGCTGGGTGGGGATCCTCTGGACTTTTCTTCTGTGTGTTTATAAGAA
TTCTATTTAAAATTTTGTATTATATTGTACCAACTAGGATTTTTGTTCAGTCCTCTTTTT
TTAAGAAAACAAAACTAGCATTTTATTACAATGTTTTTTTTTCTACTTAATACATAAGAA
GCCTCCTTACAGGTCTGTATATTTGGCTATGGCAGATATTATGTGCATTATCAAATGAGA
GCACTGAGGATCAGAGACAGAAGTCACTGCCTCAGGTCACACTGCTCATGCCAAGAGTAT
CGCATGCCAGAGCCCTGGTGTGAATGACACAAGAGCCTTTTGTGATTTGGTGGTTGGGAT
GGGGAAGCTGCAGGGTCTGAAGAGGTTCCAGCTACAGGTGAGCTTAGAGATCGGGTGATC
CAGCTATGCTCAGAGCAGAGAAGTTACTTCCCCAAAGTTTCCCAGCAATCAGAATGGTTC
CCTCACCGCCCACCATCTAGTCCAGGCATCATCCCAGGACACCATAGGCGTCTCCCTGAA
GGCTGGAGCTGCCAGTTCCTGGGCTCTGGGAGTGTTTGCCCCTAAGTCCTCTGAAAAGTG
ATCCTCATCTATAAATAAGCTGGGCTCACATGTCCCAGCACATTGTGTGTAGGGGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAACCCACTGTGCTGGGTGGGGATCCTCTGGACTTTTCTTCTGTGTGTTTATAAGAA
TTCTATTTAAAATTTTGTATTATATTGTACCAACTAGGATTTTTGTTCAGTCCTCTTTTT
TTAAGAAAACAAAACTAGCATTTTATTACAATGTTTTTTTTTCTACTTAATACATAAGAA
GCCTCCTTACAGGTCTGTATATTTGGCTATGGCAGATATTATGTGCATTATCAAATGAGA
GCACTGAGGATCAGAGACAGAAGTCACTGCCTCAGGTCACACTGCTCATGCCAAGAGTAT
CGCATGCCAGAGCCCTGGTGTGAATGACACAAGAGCCTTTTGTGATTTGGTGGTTGGGAT
GGGGAAGCTGCAGGGTCTGAAGAGGTTCCAGCTACAGGTGAGCTTAGAGATCGGGTGATC
CAGCTATGCTCAGAGCAGAGAAGTTACTTCCCCAAAGTTTCCCAGCAATCAGAATGGTTC
CCTCACCGCCCACCATCTAGTCCAGGCATCATCCCAGGACACCATAGGCGTCTCCCTGAA
GGCTGGAGCTGCCAGTTCCTGGGCTCTGGGAGTGTTTGCCCCTAAGTCCTCTGAAAAGTG
ATCCTCATCTATAAATAAGCTGGGCTCACATGTCCCAGCACATTGTGTGTAGGGGGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               368-457, + strand, RNAz p=0.708497

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-457, + strand, RNAz p=0.708497

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               30-547, gnl|bosTau2|chr10 (8786592-8786096)
               

               
               30-547, gnl|Hg17|chr15 (63486764-63486184)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-547, gnl|bosTau2|chr10 (8786592-8786096)
               

               
               30-547, gnl|Hg17|chr15 (63486764-63486184)

	30-547, gnl\|bosTau2\|chr10 (8786592-8786096)
	30-547, gnl\|Hg17\|chr15 (63486764-63486184)