Non-Coding RNA Search

Ss1.1-Pig4-TMW8039F14.3

Sequence:


               
               TTTATGAGCGTGAGGTACAGATGAATGTGCTGGCATTCAACAGGCAATTCCACTATGGTG
TGTTTTATGCTTACACAAAGCTGAAGGAACAAGAAATAAGAAATGTCGTGTGGATAGCTG
AATGCATTTCACAAAGACACCGAACTAAAATTAACAGTTACATTCCAATCTTATGACCCA
GTGGGGGGCCCCAAGTGCAGAAAATCATAAATGTTAAGAGGAAGTTACTGAGGGAAATAA
AAGGAATTGTGTTATATTATCTAGAGCACACAAAATAAGCGACACTGCACTTCATGAATT
GCAGTCCCACTGGAAACACAGCAAACCAACCCTAAAACAAAGCATTTCTTTTTCCTCCAG
AAGCCTTAAATCCTGTTTCCACAGTTATGTATCATTCTTCACTGGGCCTCAGACATTAAT
TTTAATTAACCCTATGGTACTTTTCCTATTTTTGTTTTGTTATTTCAAAAATCAAATCTA
TTACAAATGTTTCACTCTTGCTTTCCCATGCTTCCTCATAGGCACAAACTCTGAGTGTCT
GTTTTATTTTTTAACTCCCTAGGTCCACAAAAATCCAGAGCTATGCATAGTCAACATGGA
CTTCATATGGTGGAAAATACCATATATTTTTCTAACACATTTTGATCTTATAGATTTGGG
AAAGCTAGATAATTCCAAATCATATTCACTGGATGAAAGTAGTGTTAAATTTGTGATCAA
GGCTTATAAACACTTATAACTTATTTTCTCAAAATTGTCTTTAAATAAAAGATATACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGAGCGTGAGGTACAGATGAATGTGCTGGCATTCAACAGGCAATTCCACTATGGTG
TGTTTTATGCTTACACAAAGCTGAAGGAACAAGAAATAAGAAATGTCGTGTGGATAGCTG
AATGCATTTCACAAAGACACCGAACTAAAATTAACAGTTACATTCCAATCTTATGACCCA
GTGGGGGGCCCCAAGTGCAGAAAATCATAAATGTTAAGAGGAAGTTACTGAGGGAAATAA
AAGGAATTGTGTTATATTATCTAGAGCACACAAAATAAGCGACACTGCACTTCATGAATT
GCAGTCCCACTGGAAACACAGCAAACCAACCCTAAAACAAAGCATTTCTTTTTCCTCCAG
AAGCCTTAAATCCTGTTTCCACAGTTATGTATCATTCTTCACTGGGCCTCAGACATTAAT
TTTAATTAACCCTATGGTACTTTTCCTATTTTTGTTTTGTTATTTCAAAAATCAAATCTA
TTACAAATGTTTCACTCTTGCTTTCCCATGCTTCCTCATAGGCACAAACTCTGAGTGTCT
GTTTTATTTTTTAACTCCCTAGGTCCACAAAAATCCAGAGCTATGCATAGTCAACATGGA
CTTCATATGGTGGAAAATACCATATATTTTTCTAACACATTTTGATCTTATAGATTTGGG
AAAGCTAGATAATTCCAAATCATATTCACTGGATGAAAGTAGTGTTAAATTTGTGATCAA
GGCTTATAAACACTTATAACTTATTTTCTCAAAATTGTCTTTAAATAAAAGATATACCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|190376|gb|AAC15852.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|190376|gb|AAC15852.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               13-131, + strand, RNAz p=0.721352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-131, + strand, RNAz p=0.721352

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-780, gnl|bosTau2|chr14 (48509662-48508915)
               

               
               13-780, gnl|Hg17|chr8 (87234159-87235568)
               

               
               13-780, gnl|Mm7|chr4 (19805530-19804769)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-780, gnl|bosTau2|chr14 (48509662-48508915)
               

               
               13-780, gnl|Hg17|chr8 (87234159-87235568)
               

               
               13-780, gnl|Mm7|chr4 (19805530-19804769)

	13-780, gnl\|bosTau2\|chr14 (48509662-48508915)
	13-780, gnl\|Hg17\|chr8 (87234159-87235568)
	13-780, gnl\|Mm7\|chr4 (19805530-19804769)