Non-Coding RNA Search

Ss1.1-Pig4-TMW8039H24.5

Sequence:


               
               TATCCCCATAAATATGGTCCACAGGGGGGCTGTGCAGATCATTCAGTATTTGAATTCCGA
GCAGAATCATGATGACTACTGTTTGGCCTATGTCTTCACAGACCGAGATTTTGATGATGG
TGTCCTTGGTCTGGCATGGGTTGGAGCACCTTCAGGAAGCTCTGGAGGAATATGTGAAAA
AAGCAAGCTCTATTCAGATGGTAAGAAGAAATCCTTAAACACTGGAATTATTACTGTTCA
GAACTATGGGTCCCATGTACCCCCCAAAGTTTCTCACATTACATTTGCTCATGAAGTTGG
ACATAACTTTGGATCTCCACATGATTCTGGAACAGAGTGTACTCCAGGAGAATCTAAGAA
TTTAGGACAAAAAGAAAATGGCAATTACATCATGTATGCAAGAGCAACATCTGGGGACAA
ACTTAACAACAATAAATTCTCACTCTGTAGTATTAGAAATATAAGTCAAGTTCTTGAGAA
GAAGAGAAACAACTGTTTTGTTGAATCTGGCCAGCCTATCTGTGGAAATGGAATGGTAGA
GCAAGGTGAACAATGTGATTGTGGCTATAGTGACCAGTGTAAAGATGAGTGCTGCTATGA
TGCAAACCAGCCAGAGGGGAAAAAATGCAGGCTGAAACCTGAAAAGGAGTGCAGTCCAAG
TCAAGGTCCCTGTTGCACAGCACAGTGTAAATTCAAATCCAAAACTGAGAAGTGTCGGGA
TGATTCAGACTGTGCAAAAGAAGGAATATGTAATGGCATCACAGCTCTCTGCCCAGCATC
TGATCCTAAACCAAACTTTACAGACTGTAATAGGCATACGCAAGTATGCATTAATGGGCA
ATGTGCAGGTTCTATCTGTGAGAAATACGGCTTGGAGGAGTGTACCTGTGCCAGTTCTGA
TGGCAAAGATGATAAGGAATTATGCCATGTCTGCTGTATGAAGAAGATGGAGCCATTAAC
TTGTGCCAGTACAGGGTCTGAGAAGTGGAAGAAGCACTTCCTTGGTCGAACCATCACCCT
GCAACCTGGATCCCCATGCAATGATTTCAGAGGCTACTGTGATGTTTTCATGCGGTGCAG
ATTAGTAGATGCTGACGGTCCTCTAGCTAGGCTTAAAAAAGCAATTTTCAGTCCAGAGCT
CTATGAAAACATAGCTGAATGGATCGTGGCTTATTGGTGGGCAGTATTACTTATGGGAAT
TGCCCTGATCATGTTAATGGCTGGTTTTATCAAGATATGCAGTGTTCACACTCCAAGTAG
TAATCCAAAGTTGCCTCCTCCCAAACCTCTTCCAGGCACTTTAAAGAGGAGGAGACCCCC
CCAGACCATTCAGCCACCCCAGCGCCAGAGGCCCCGGGAAAGTTATCAAATGGGACACAT
GAGACGTTAACTCAGCTTTTGCCTTGGTTCTTCCTAGTGCCTACAATGGGAAAACTTCAC
TCCAAAGAGAAACCTATTAAATCATCATCCCCAAACTAAACCCTCACAAACAACAGTTGA
AGAAACAAATGGCAAGAGATCATGTCCTCAGATCAGGTGGAATTACTTAAATTTTAAAGC
CTGAAAATTCCAATTTGGGGGTGGGATGTGAAAAAAGAACCCAATTTTCTTACTGACGGA
TATTTTTAACCTAATGGCACAAAGTCTTAGAATATTATTATGTGCCCCGTGTTCCCTGTT
CTTCGTTGCTGCATTTTCTTCACTTGCAGGCAAACTTGGCTCTCGATAAACTTTTATCAC
AAATTGAAAAATATATATATTTTTTTCAACTGCCAATCAAGGCTAGGAGGCTCGACCACC
TCAACATTGGAGACATCACTTGCCAATGTACATACCTTGTTATATGCAGACCTGTATTTC
TTACGTACACTGTACTTCTGTGTG------------AATTGNCATATGGATGTTTCTTTG
TATTATAAAATTTTCCGCTCTTAATGAAAATTACTGTTTTATTGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCCCCATAAATATGGTCCACAGGGGGGCTGTGCAGATCATTCAGTATTTGAATTCCGA
GCAGAATCATGATGACTACTGTTTGGCCTATGTCTTCACAGACCGAGATTTTGATGATGG
TGTCCTTGGTCTGGCATGGGTTGGAGCACCTTCAGGAAGCTCTGGAGGAATATGTGAAAA
AAGCAAGCTCTATTCAGATGGTAAGAAGAAATCCTTAAACACTGGAATTATTACTGTTCA
GAACTATGGGTCCCATGTACCCCCCAAAGTTTCTCACATTACATTTGCTCATGAAGTTGG
ACATAACTTTGGATCTCCACATGATTCTGGAACAGAGTGTACTCCAGGAGAATCTAAGAA
TTTAGGACAAAAAGAAAATGGCAATTACATCATGTATGCAAGAGCAACATCTGGGGACAA
ACTTAACAACAATAAATTCTCACTCTGTAGTATTAGAAATATAAGTCAAGTTCTTGAGAA
GAAGAGAAACAACTGTTTTGTTGAATCTGGCCAGCCTATCTGTGGAAATGGAATGGTAGA
GCAAGGTGAACAATGTGATTGTGGCTATAGTGACCAGTGTAAAGATGAGTGCTGCTATGA
TGCAAACCAGCCAGAGGGGAAAAAATGCAGGCTGAAACCTGAAAAGGAGTGCAGTCCAAG
TCAAGGTCCCTGTTGCACAGCACAGTGTAAATTCAAATCCAAAACTGAGAAGTGTCGGGA
TGATTCAGACTGTGCAAAAGAAGGAATATGTAATGGCATCACAGCTCTCTGCCCAGCATC
TGATCCTAAACCAAACTTTACAGACTGTAATAGGCATACGCAAGTATGCATTAATGGGCA
ATGTGCAGGTTCTATCTGTGAGAAATACGGCTTGGAGGAGTGTACCTGTGCCAGTTCTGA
TGGCAAAGATGATAAGGAATTATGCCATGTCTGCTGTATGAAGAAGATGGAGCCATTAAC
TTGTGCCAGTACAGGGTCTGAGAAGTGGAAGAAGCACTTCCTTGGTCGAACCATCACCCT
GCAACCTGGATCCCCATGCAATGATTTCAGAGGCTACTGTGATGTTTTCATGCGGTGCAG
ATTAGTAGATGCTGACGGTCCTCTAGCTAGGCTTAAAAAAGCAATTTTCAGTCCAGAGCT
CTATGAAAACATAGCTGAATGGATCGTGGCTTATTGGTGGGCAGTATTACTTATGGGAAT
TGCCCTGATCATGTTAATGGCTGGTTTTATCAAGATATGCAGTGTTCACACTCCAAGTAG
TAATCCAAAGTTGCCTCCTCCCAAACCTCTTCCAGGCACTTTAAAGAGGAGGAGACCCCC
CCAGACCATTCAGCCACCCCAGCGCCAGAGGCCCCGGGAAAGTTATCAAATGGGACACAT
GAGACGTTAACTCAGCTTTTGCCTTGGTTCTTCCTAGTGCCTACAATGGGAAAACTTCAC
TCCAAAGAGAAACCTATTAAATCATCATCCCCAAACTAAACCCTCACAAACAACAGTTGA
AGAAACAAATGGCAAGAGATCATGTCCTCAGATCAGGTGGAATTACTTAAATTTTAAAGC
CTGAAAATTCCAATTTGGGGGTGGGATGTGAAAAAAGAACCCAATTTTCTTACTGACGGA
TATTTTTAACCTAATGGCACAAAGTCTTAGAATATTATTATGTGCCCCGTGTTCCCTGTT
CTTCGTTGCTGCATTTTCTTCACTTGCAGGCAAACTTGGCTCTCGATAAACTTTTATCAC
AAATTGAAAAATATATATATTTTTTTCAACTGCCAATCAAGGCTAGGAGGCTCGACCACC
TCAACATTGGAGACATCACTTGCCAATGTACATACCTTGTTATATGCAGACCTGTATTTC
TTACGTACACTGTACTTCTGTGTG------------AATTGNCATATGGATGTTTCTTTG
TATTATAAAATTTTCCGCTCTTAATGAAAATTACTGTTTTATTGACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1082471|pir||S52920

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1082471|pir||S52920

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1725-1909, - strand, RNAz p=0.93682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1725-1909, - strand, RNAz p=0.93682

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1293-1956, gnl|bosTau2|chr10 (33754295-33753610)
               

               
               1293-1956, gnl|Hg17|chr15 (56677135-56676458)
               

               
               1293-1956, gnl|Mm7|chr9 (70810240-70810915)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1293-1956, gnl|bosTau2|chr10 (33754295-33753610)
               

               
               1293-1956, gnl|Hg17|chr15 (56677135-56676458)
               

               
               1293-1956, gnl|Mm7|chr9 (70810240-70810915)

	1293-1956, gnl\|bosTau2\|chr10 (33754295-33753610)
	1293-1956, gnl\|Hg17\|chr15 (56677135-56676458)
	1293-1956, gnl\|Mm7\|chr9 (70810240-70810915)