Non-Coding RNA Search

Ss1.1-Pig4-TMW8039K18.3

Sequence:


               
               GGTCTCGGCCACGCCAGAAGCTGATGGCCCCCGGCTGGCCGCCTGTGTTTGAAGGCGCCT
GGCCGTCTTCCCAGCGGAAGCTGGACCCAGGAGGGAGGTGTGACAGCCAACGGCCAACCC
CTGGGCTCCCCCCACCTCGCAACCGGGTCCTGGGCGCCCCTCCAGCCCAGGTGCACTCAC
CTGTCTGCCAGCTGCACAAGCGCCCAGCCTGGGGGTGAGTGCGGAGGCCAAGGCCCCCCC
GGGAGCCCTTCAAGGGAGCCGGCGCTGAACCTGCATGAGCAGCCCCCCGAGACTGTGACT
CCTACTGCAAGGCCTCCAAGGGGAAGCTGAAGATTAACATGAAGAAATACTGCAAGAAGG
ACTACGCCGTCCAGATCCACATCCTGAAGGCCGACAAGGCGGGGGACTGGTGGAAGTTCA
CGGTGAACATCATCTCCGTGTACAAGCAGGGCGCCAGCCGCATCCGCCGCGGTGACCAGA
ACCTGTGGATCCGCTCGCGGGACATCGCCTGCAAGTGCCCCAAAATCAAGCCCCTCAAGA
AGTACCTGCTGCTGGGCAACGCGGAGGACTCGCCCGACCAGAGCGGCATCGTGGCGGACA
AGAGCAGCCTGGTGATCCAGTGGCGGGACACGTGGGCGCGGCGGCTGCGCAAGTTCCAGC
AGCGCGAGAAGAAGGGTGGCAGTGAGGACCCAGCCTCGGGAAGCGTCTCTTCCTCCCCCG
CCCCCGCCCCGGGAGATGGAACAGGAGAATTGTAATGGACCCAGATGGAACTTGTAACGT
GGGCCCCACATGATAGAACTAAATTCCGATATCAATTAAATAAACTCTTGTACACTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCGGCCACGCCAGAAGCTGATGGCCCCCGGCTGGCCGCCTGTGTTTGAAGGCGCCT
GGCCGTCTTCCCAGCGGAAGCTGGACCCAGGAGGGAGGTGTGACAGCCAACGGCCAACCC
CTGGGCTCCCCCCACCTCGCAACCGGGTCCTGGGCGCCCCTCCAGCCCAGGTGCACTCAC
CTGTCTGCCAGCTGCACAAGCGCCCAGCCTGGGGGTGAGTGCGGAGGCCAAGGCCCCCCC
GGGAGCCCTTCAAGGGAGCCGGCGCTGAACCTGCATGAGCAGCCCCCCGAGACTGTGACT
CCTACTGCAAGGCCTCCAAGGGGAAGCTGAAGATTAACATGAAGAAATACTGCAAGAAGG
ACTACGCCGTCCAGATCCACATCCTGAAGGCCGACAAGGCGGGGGACTGGTGGAAGTTCA
CGGTGAACATCATCTCCGTGTACAAGCAGGGCGCCAGCCGCATCCGCCGCGGTGACCAGA
ACCTGTGGATCCGCTCGCGGGACATCGCCTGCAAGTGCCCCAAAATCAAGCCCCTCAAGA
AGTACCTGCTGCTGGGCAACGCGGAGGACTCGCCCGACCAGAGCGGCATCGTGGCGGACA
AGAGCAGCCTGGTGATCCAGTGGCGGGACACGTGGGCGCGGCGGCTGCGCAAGTTCCAGC
AGCGCGAGAAGAAGGGTGGCAGTGAGGACCCAGCCTCGGGAAGCGTCTCTTCCTCCCCCG
CCCCCGCCCCGGGAGATGGAACAGGAGAATTGTAATGGACCCAGATGGAACTTGTAACGT
GGGCCCCACATGATAGAACTAAATTCCGATATCAATTAAATAAACTCTTGTACACTGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873840|ref|XP_601055.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873840|ref|XP_601055.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               13-119, - strand, RNAz p=0.641179

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-119, - strand, RNAz p=0.641179

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               13-181, gnl|bosTau2|chr19 (21414311-21414477)
               

               
               13-181, gnl|Hg17|chr17 (9030379-9030568)
               


               
               366-676, gnl|bosTau2|chr19 (21460202-21460512)
               

               
               366-676, gnl|Hg17|chr17 (9083681-9083991)
               

               
               366-676, gnl|Mm7|chr11 (68294909-68294599)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-181, gnl|bosTau2|chr19 (21414311-21414477)
               

               
               13-181, gnl|Hg17|chr17 (9030379-9030568)
               


               
               366-676, gnl|bosTau2|chr19 (21460202-21460512)
               

               
               366-676, gnl|Hg17|chr17 (9083681-9083991)
               

               
               366-676, gnl|Mm7|chr11 (68294909-68294599)

	13-181, gnl\|bosTau2\|chr19 (21414311-21414477)
	13-181, gnl\|Hg17\|chr17 (9030379-9030568)

	366-676, gnl\|bosTau2\|chr19 (21460202-21460512)
	366-676, gnl\|Hg17\|chr17 (9083681-9083991)
	366-676, gnl\|Mm7\|chr11 (68294909-68294599)