Non-Coding RNA Search

Ss1.1-Pig4-TMW8039K19.3

Sequence:


               
               GGTAATGCTCAGGAGGAAAAGAGGTATCTCACAGGTAGTGAGGAGGTGTATGGGCATTCC
CACCTTCCTGAACAGCTGGTGCACATCTACAGCCAGCCCATTGCCATCCTTCAAACATCT
GACCTTTTCTCCACTCCAGAGCAGTTACATTCCGCTAAGTCAGCTACTTTGCCAAGAAAG
GGACAGCTTGTGTATGGCCAATTGATGGAGCCAGTAAATAGAGAAAACTTTACACAGACA
TTGCCCAAAATGCCAATGCATTCTCATGCACAGCCACCAGATGCCAGGGAGGAGAGCATC
CCACTCGAAGGGCAGCAGAGCTTGCCATCCCAAACTTCAGATTGGAGCCGGTATTCGAAC
AGCTTACTAGAATCCGTTTCTGTTCCTGGAACACTAAATGAAGCTGTTGTCATGACTCCA
TTTTCATCAGAGCTTCAAGGAATTTCAGAACAGACCCTCCTAGAACTGTCCAAAGGAAAG
CCCTCCCCTCATCCCAGAGCCTGGTTTGTGTCTCTTGATGGAAAGCCAGTCGCACAAGTG
AGGCATTCTTTCATCGACCTGAAAAAGGGCAAGAGAGCCCAGAGCAATGACACGAGTCTG
GATTCTGGGGTGGACATGAATGAGCACCACTCAAGCAGAAAGCTGGAGAGGGAGAAAACT
TTCATCAAAAGCATGCATCAGCCTAAGATCCTTTACTTAGAAGATTTAGACCTGAGCAGT
AGTGAGAGTGGAACCACTGTCTGCTCCCCCGAGGACCCAGCTTTAAGGCACATCCTCGAT
GGAGGGAGCGGAGCCATCATGGAGCACCCCGGGGAAGAGTCCCCAGGAAGGAAAAACACC
GTTGACGATTTTGAAGCCAACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAATGCTCAGGAGGAAAAGAGGTATCTCACAGGTAGTGAGGAGGTGTATGGGCATTCC
CACCTTCCTGAACAGCTGGTGCACATCTACAGCCAGCCCATTGCCATCCTTCAAACATCT
GACCTTTTCTCCACTCCAGAGCAGTTACATTCCGCTAAGTCAGCTACTTTGCCAAGAAAG
GGACAGCTTGTGTATGGCCAATTGATGGAGCCAGTAAATAGAGAAAACTTTACACAGACA
TTGCCCAAAATGCCAATGCATTCTCATGCACAGCCACCAGATGCCAGGGAGGAGAGCATC
CCACTCGAAGGGCAGCAGAGCTTGCCATCCCAAACTTCAGATTGGAGCCGGTATTCGAAC
AGCTTACTAGAATCCGTTTCTGTTCCTGGAACACTAAATGAAGCTGTTGTCATGACTCCA
TTTTCATCAGAGCTTCAAGGAATTTCAGAACAGACCCTCCTAGAACTGTCCAAAGGAAAG
CCCTCCCCTCATCCCAGAGCCTGGTTTGTGTCTCTTGATGGAAAGCCAGTCGCACAAGTG
AGGCATTCTTTCATCGACCTGAAAAAGGGCAAGAGAGCCCAGAGCAATGACACGAGTCTG
GATTCTGGGGTGGACATGAATGAGCACCACTCAAGCAGAAAGCTGGAGAGGGAGAAAACT
TTCATCAAAAGCATGCATCAGCCTAAGATCCTTTACTTAGAAGATTTAGACCTGAGCAGT
AGTGAGAGTGGAACCACTGTCTGCTCCCCCGAGGACCCAGCTTTAAGGCACATCCTCGAT
GGAGGGAGCGGAGCCATCATGGAGCACCCCGGGGAAGAGTCCCCAGGAAGGAAAAACACC
GTTGACGATTTTGAAGCCAACATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21739824|emb|CAD38939.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21739824|emb|CAD38939.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               354-472, - strand, RNAz p=0.966987
               

               
               553-752, - strand, RNAz p=0.97238

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               354-472, - strand, RNAz p=0.966987
               

               
               553-752, - strand, RNAz p=0.97238

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               354-766, gnl|bosTau2|chr10 (2117804-2118216)
               

               
               354-766, gnl|Hg17|chr2 (187452445-187452856)
               

               
               354-766, gnl|Mm7|chr2 (83723555-83723964)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               354-766, gnl|bosTau2|chr10 (2117804-2118216)
               

               
               354-766, gnl|Hg17|chr2 (187452445-187452856)
               

               
               354-766, gnl|Mm7|chr2 (83723555-83723964)

	354-472, - strand, RNAz p=0.966987
	553-752, - strand, RNAz p=0.97238

	354-766, gnl\|bosTau2\|chr10 (2117804-2118216)
	354-766, gnl\|Hg17\|chr2 (187452445-187452856)
	354-766, gnl\|Mm7\|chr2 (83723555-83723964)