Non-Coding RNA Search

Ss1.1-Pig4-TMW8039O06.5

Sequence:


               
               GCCAGGACCCCCAGAACCTGGAGTGAAGAGTGCTGACGTTCCCGTCCTGGGGGTCAGGCT
CTGTCTTCCCCTCAGGCCACTGTGTGATCTTCAGCTGGGTCCCCTCACCCTGACAGGCTC
ACCTTCTGAAGTGCTGCCGTCTTGTGGGGGAAAGAGAGCTGCTACTGTTTCCTAACCTGT
GTTCATTGTTTTTTATATATTGTATACAAATTACTTCTATTCTCTAACATCCTTGGAGAA
GTTGGAATACATTTTTCTTCTTAAGTAAAGTGAACCCTCCTGCCAACTATGGTTCTAGGG
AAACCTCGGAGCTGGGTAGAGCTCAGAATCATATGAGTAGTAGGAGAAAGATGCCTGAGT
GTGGACTAAAATTAGCACGTAGTCTCAGGCCCAGACCCAGAAAGCTTAGTGGCCATGCTT
GCCCACCGACGAGGTGGAGCAGGCGGGAACGCAATCCTAAGTGCTACCCAGTGAAGGCAA
GCCGACATCTCCCCGCTCCTGCTTCAGGGCAGCAGCTCTAGGGCAGTCACTGTGATGGGC
AGGTTTTGGCAGCAGCACATCACTCCCGGGGACTTGGACCAGGTACCTGCCAGGTTTCCT
GTCTGTCTGACTCGTGCTTGGTTCTGCAGAGAGCCTGCTACCTATCCATAAACCCCCAGA
AGGATGAGACACTCGAGACGGAGAAAGCTCAGTATTACCTGCCTGACGGCAGCACCATTG
AGGTAGGTGGCCCAGCCTCTCTCCCTTCAGGCCCCTCCGGCCCCCAAAAGCTCTGGGCCC
AAACAGAACTCCCCACGGGGAAGCTGAAGTTGGGGGTACCAGGCCTTTTGAACCCTCTGC
CTGGAGCACCGTAGCTCTTGAGCAGCACTGTCTCTAGCAGGGAGAGACGCCAGGGACGTC
GCTTCTCTGTGTGCCGGGATCGGATTAGTAAGGGCAGTGAACAGTGCTGTCCTTAACCAT
GGGCACAGTATAGCGTGAGTGGCCTCTCCCTGGATGTCCAATGACAGGAAGAAATTTCCA
TGAATGAATGAATCCATCTATTAAGTCTCTTGGCTGGAAAATGCCAGAGCTGGGATTAAA
CGTAGGAGCGTCCTTTCTCTAGTTTTCCAGCAGACCTGTTTGTCCCCTGCTTGTTCCCAG
GAGCCCTCTCTTTGGTCCTGATCTACGAGGCCTTGATGGGCAAGGTCTTCCTGGCCACCT
GGCCACGAAGCGATGGGCAGAGGGCCTTCTTCCATCCCCACCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGACCCCCAGAACCTGGAGTGAAGAGTGCTGACGTTCCCGTCCTGGGGGTCAGGCT
CTGTCTTCCCCTCAGGCCACTGTGTGATCTTCAGCTGGGTCCCCTCACCCTGACAGGCTC
ACCTTCTGAAGTGCTGCCGTCTTGTGGGGGAAAGAGAGCTGCTACTGTTTCCTAACCTGT
GTTCATTGTTTTTTATATATTGTATACAAATTACTTCTATTCTCTAACATCCTTGGAGAA
GTTGGAATACATTTTTCTTCTTAAGTAAAGTGAACCCTCCTGCCAACTATGGTTCTAGGG
AAACCTCGGAGCTGGGTAGAGCTCAGAATCATATGAGTAGTAGGAGAAAGATGCCTGAGT
GTGGACTAAAATTAGCACGTAGTCTCAGGCCCAGACCCAGAAAGCTTAGTGGCCATGCTT
GCCCACCGACGAGGTGGAGCAGGCGGGAACGCAATCCTAAGTGCTACCCAGTGAAGGCAA
GCCGACATCTCCCCGCTCCTGCTTCAGGGCAGCAGCTCTAGGGCAGTCACTGTGATGGGC
AGGTTTTGGCAGCAGCACATCACTCCCGGGGACTTGGACCAGGTACCTGCCAGGTTTCCT
GTCTGTCTGACTCGTGCTTGGTTCTGCAGAGAGCCTGCTACCTATCCATAAACCCCCAGA
AGGATGAGACACTCGAGACGGAGAAAGCTCAGTATTACCTGCCTGACGGCAGCACCATTG
AGGTAGGTGGCCCAGCCTCTCTCCCTTCAGGCCCCTCCGGCCCCCAAAAGCTCTGGGCCC
AAACAGAACTCCCCACGGGGAAGCTGAAGTTGGGGGTACCAGGCCTTTTGAACCCTCTGC
CTGGAGCACCGTAGCTCTTGAGCAGCACTGTCTCTAGCAGGGAGAGACGCCAGGGACGTC
GCTTCTCTGTGTGCCGGGATCGGATTAGTAAGGGCAGTGAACAGTGCTGTCCTTAACCAT
GGGCACAGTATAGCGTGAGTGGCCTCTCCCTGGATGTCCAATGACAGGAAGAAATTTCCA
TGAATGAATGAATCCATCTATTAAGTCTCTTGGCTGGAAAATGCCAGAGCTGGGATTAAA
CGTAGGAGCGTCCTTTCTCTAGTTTTCCAGCAGACCTGTTTGTCCCCTGCTTGTTCCCAG
GAGCCCTCTCTTTGGTCCTGATCTACGAGGCCTTGATGGGCAAGGTCTTCCTGGCCACCT
GGCCACGAAGCGATGGGCAGAGGGCCTTCTTCCATCCCCACCCCCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               343-461, - strand, RNAz p=0.999523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-461, - strand, RNAz p=0.999523

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-461, gnl|bosTau2|chr26 (14057268-14057764)
               

               
               1-461, gnl|Hg17|chr10 (104233854-104233021)
               


               
               568-1113, gnl|bosTau2|chr26 (14057853-14058398)
               

               
               568-1113, gnl|Hg17|chr10 (104232914-104232089)
               

               
               568-1113, gnl|Mm7|chr19 (46277040-46276553)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-461, gnl|bosTau2|chr26 (14057268-14057764)
               

               
               1-461, gnl|Hg17|chr10 (104233854-104233021)
               


               
               568-1113, gnl|bosTau2|chr26 (14057853-14058398)
               

               
               568-1113, gnl|Hg17|chr10 (104232914-104232089)
               

               
               568-1113, gnl|Mm7|chr19 (46277040-46276553)

	1-461, gnl\|bosTau2\|chr26 (14057268-14057764)
	1-461, gnl\|Hg17\|chr10 (104233854-104233021)

	568-1113, gnl\|bosTau2\|chr26 (14057853-14058398)
	568-1113, gnl\|Hg17\|chr10 (104232914-104232089)
	568-1113, gnl\|Mm7\|chr19 (46277040-46276553)