Non-Coding RNA Search

Ss1.1-Pig4-TMW8039O12.5

Sequence:


               
               GTGTCTTTGAAAGCCAACCACCTGGGGAAGCCACAGATTAAAAATGCCTTGGTGATCAAC
CTTCACTGCGGAGCATGTCAAGATGGATGGATGTACTGGAATCCAATGCTGTTTCTACAG
TAAAGTGCAATCTTTGTTGTTTTTGTATTTATTTGTATGTTCAGATCCAAAGGATCTGTT
GTAAAAATATATATATATGAATATATATCCAGTGCAATCAACTTTCATTTCTTTTTCCTT
GATCGCATATGAATATATAGAAAGAATGAAAAGTTACAGTACTTTGTGAGAAAATCCCAG
CTGACGTCATGAAGAATACAAGGTCTCCTTCAGGACCTATTGTCATCAACCATCCCAGTT
TCTTCTGAAGGTCACAGTTTATACAAAGATATTTGCTTTCCTTGGACTTGTTCTTCATCT
ATTTTTTATTTCTAGCCAAAATAAATAAAAAGCATTTATGAGAACTATACATAAAGCTTT
CTGTATTTCAGAAAGACACAAACTATTAGAAAGTGAAAGGTGAATAAATAAGTGACAGAA
TGTAAATTTTGTACAATATTAGAATGTGTAAATGAAGCTTGCTTGGAAGGGGGAAACTTT
AAATAAAAACTTTATGTACCAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCTTTGAAAGCCAACCACCTGGGGAAGCCACAGATTAAAAATGCCTTGGTGATCAAC
CTTCACTGCGGAGCATGTCAAGATGGATGGATGTACTGGAATCCAATGCTGTTTCTACAG
TAAAGTGCAATCTTTGTTGTTTTTGTATTTATTTGTATGTTCAGATCCAAAGGATCTGTT
GTAAAAATATATATATATGAATATATATCCAGTGCAATCAACTTTCATTTCTTTTTCCTT
GATCGCATATGAATATATAGAAAGAATGAAAAGTTACAGTACTTTGTGAGAAAATCCCAG
CTGACGTCATGAAGAATACAAGGTCTCCTTCAGGACCTATTGTCATCAACCATCCCAGTT
TCTTCTGAAGGTCACAGTTTATACAAAGATATTTGCTTTCCTTGGACTTGTTCTTCATCT
ATTTTTTATTTCTAGCCAAAATAAATAAAAAGCATTTATGAGAACTATACATAAAGCTTT
CTGTATTTCAGAAAGACACAAACTATTAGAAAGTGAAAGGTGAATAAATAAGTGACAGAA
TGTAAATTTTGTACAATATTAGAATGTGTAAATGAAGCTTGCTTGGAAGGGGGAAACTTT
AAATAAAAACTTTATGTACCAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-270, - strand, RNAz p=0.651525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-270, - strand, RNAz p=0.651525

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-624, gnl|bosTau2|chr24 (18803143-18803768)
               

               
               2-624, gnl|Hg17|chr18 (28507251-28506632)
               

               
               2-624, gnl|Mm7|chr18 (21927884-21927267)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-624, gnl|bosTau2|chr24 (18803143-18803768)
               

               
               2-624, gnl|Hg17|chr18 (28507251-28506632)
               

               
               2-624, gnl|Mm7|chr18 (21927884-21927267)

	2-624, gnl\|bosTau2\|chr24 (18803143-18803768)
	2-624, gnl\|Hg17\|chr18 (28507251-28506632)
	2-624, gnl\|Mm7\|chr18 (21927884-21927267)