Ss1.1-Pig4-TMW8039P08.3
|
CTTAGACGGAGGGGAGGATACAGGGAAACTTGGTTAAAAACAGAGTTAAAGGGAATGGGT
CTCGGAAGCCGAGGGTCTGAAGTTCAAGACTCCTAGAAGGGGAGGGGAATGAAAGCCACT
CAGTGAAGAAGGTACAGTAAATAAATGTCCAGCGACATGGCGGGCTGGGAAGTTAAATGA
AATGGTCTAGTCTAGGCTGGAGGTCACGAGAGGAAAAGGGTGGGAATGGTGTATTAATTC
TCGGAGTGTTTCTCCAGGTTTTTTTTTGTTGTTACACTCCTCTCTTCTCATTCCTATCTC
TGTTACAAGCCACTGAGGCTCTTCAGCCCCGTTGTCTGCCTTTTTTCTACTCTCTGGGAA
AGAGGGTCACTGAGGCGCCATTTGTTTCCTCGTTCCGTGTACGTCTTTGCAGTTTGCAGT
ACAGATAACAATACCTTGGATGTGTATAGAGTTTAAATATACCTAAGCCCTTTACCAATA
TACATATTTTATATGTACATATTTAAATATACATATATGTATGTATAATATACATACAAT
AATATACATATGTACAATAACTATAGATATTGTTTGTGTCTTCCAGTCCTACTCGCAGAG
TCATAACAGCTATCATTTATTGTGTTCTTGATATATGCCTGTCACAGCATTTACATACAC
GATATCATTTGATCTTCATAATATAATAATAACCTTGTTAGGAAACACGTCCAGAAAGGA
AATGACTTGCTCAAGTTCACAGGCATTCAGACCTAGATCTGTTCCCATTTTACAGACCAG
GACATAGGAAAGCTTAGGACAGTACTATATAAAATAGTAACTAACTTATGGATACTATTT
ATAGTTTACATTCACATATATTATTTCATCCTCACACCTGTAATACCTTTACCAAAAGAT
ATTGGGTCTGGAAACAGACCAAAAGGAGTTAAATGGCTTGTCCAAAGTCAAATCAGCAGG
CTATCTCAGAGCCAGCAAGGGCTTTTTACATTTATT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTAGACGGAGGGGAGGATACAGGGAAACTTGGTTAAAAACAGAGTTAAAGGGAATGGGT
CTCGGAAGCCGAGGGTCTGAAGTTCAAGACTCCTAGAAGGGGAGGGGAATGAAAGCCACT
CAGTGAAGAAGGTACAGTAAATAAATGTCCAGCGACATGGCGGGCTGGGAAGTTAAATGA
AATGGTCTAGTCTAGGCTGGAGGTCACGAGAGGAAAAGGGTGGGAATGGTGTATTAATTC
TCGGAGTGTTTCTCCAGGTTTTTTTTTGTTGTTACACTCCTCTCTTCTCATTCCTATCTC
TGTTACAAGCCACTGAGGCTCTTCAGCCCCGTTGTCTGCCTTTTTTCTACTCTCTGGGAA
AGAGGGTCACTGAGGCGCCATTTGTTTCCTCGTTCCGTGTACGTCTTTGCAGTTTGCAGT
ACAGATAACAATACCTTGGATGTGTATAGAGTTTAAATATACCTAAGCCCTTTACCAATA
TACATATTTTATATGTACATATTTAAATATACATATATGTATGTATAATATACATACAAT
AATATACATATGTACAATAACTATAGATATTGTTTGTGTCTTCCAGTCCTACTCGCAGAG
TCATAACAGCTATCATTTATTGTGTTCTTGATATATGCCTGTCACAGCATTTACATACAC
GATATCATTTGATCTTCATAATATAATAATAACCTTGTTAGGAAACACGTCCAGAAAGGA
AATGACTTGCTCAAGTTCACAGGCATTCAGACCTAGATCTGTTCCCATTTTACAGACCAG
GACATAGGAAAGCTTAGGACAGTACTATATAAAATAGTAACTAACTTATGGATACTATTT
ATAGTTTACATTCACATATATTATTTCATCCTCACACCTGTAATACCTTTACCAAAAGAT
ATTGGGTCTGGAAACAGACCAAAAGGAGTTAAATGGCTTGTCCAAAGTCAAATCAGCAGG
CTATCTCAGAGCCAGCAAGGGCTTTTTACATTTATT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-474, gnl|bosTau2|chr14 (19039693-19039229) |
| |
|
478-988, gnl|bosTau2|chr14 (19039309-19038786) |
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478-988, gnl|canFam2|chr29 (19238958-19239444) |
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478-988, gnl|echTel1|scaffold_279778 (41627-42280) |
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478-988, gnl|hg17|chr8 (67742587-67743017) |
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478-988, gnl|Hg17|chr8 (67742653-67743236) |
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478-988, gnl|loxAfr1|scaffold_259 (17711-17191) |
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478-988, gnl|oryCun1|scaffold_215358 (64255-63731) |
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478-988, gnl|panTro1|chr7 (69757534-69757962) |
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478-988, gnl|rheMac2|chr8 (69300128-69300559) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-474, gnl|bosTau2|chr14 (19039693-19039229) |
| |
|
478-988, gnl|bosTau2|chr14 (19039309-19038786) |
|
478-988, gnl|canFam2|chr29 (19238958-19239444) |
|
478-988, gnl|echTel1|scaffold_279778 (41627-42280) |
|
478-988, gnl|hg17|chr8 (67742587-67743017) |
|
478-988, gnl|Hg17|chr8 (67742653-67743236) |
|
478-988, gnl|loxAfr1|scaffold_259 (17711-17191) |
|
478-988, gnl|oryCun1|scaffold_215358 (64255-63731) |
|
478-988, gnl|panTro1|chr7 (69757534-69757962) |
|
478-988, gnl|rheMac2|chr8 (69300128-69300559) |
