Non-Coding RNA Search

Ss1.1-Pig4-TMW8040G21.5

Sequence:


               
               CTCACGCATCCTGCTCCAGCAGTCTAGCCTAGAAAGAAAAAGGGACACCTAAGTAGCTTT
TGGAAAAACACAGAACTAAAAGTCCGTGCCTTCTGAGAGGAGCTTTGAGCACTAAGGATT
CTACAACACCATCCAAATGCAGCCAGGTGTGACCACTGGATCATCCAAATCGGGCTGTAC
CTGAAGCCAGTTTCCACGTACCTGGGGGACAGCTGGGCACCATAGGAAGCCCTCGGGATC
ACGTGGCAGGTGTAGAACATGGACCCTCAAAGACTGCTGCCCCTGGCGTTTAGAGGGGGC
ACCATAGTGGCTCCGGCCCAGGCCAAAATGAGATAGTAATTCATACCATGAGTCCCCAGA
CCTGACCAGGAGCAGGAACATACATCCAGGAGGTTCAGATGATTTCCTGTGTCTGTAAGA
AGCAGTCCACGATCATTTCACACCAGGCACGAACTTCAGACCTGCAGTGTCCAGCTCTTT
CAAGTGGAATGAGGGGTTATGAGTTGTCTCTGGGCTCTGTGTCAACAGCCCTGCTCGAAG
ACCAGCCCAGGCCTGGCAAAAGGCCCCTTCTGTCTCTTGCTGTGTCCTCCAGAGGCTTGG
CGAGCAGCTCTCCTACCTGGAAACCTCAAGGCTAGAGCATCACAGACCTAGGATCCTGCA
AGTGAGGCAGGAACCACCCCCCAACATCTCCACATAGCTTCAGAAATGTCATCACAGTTG
AGGTTTATACCTGCCAAAAGTAGATGCTTTCTTCCCTTCACCTGGAATAAGACAAGACTT
CCATAGGAAATCCCTTAATGTTTCCTGGTAGAAATCCATGCAAAAATATGGGATAAGTCA
TTTCATACAAAAACAGCAGCAAAGAATAAAGTACCAATGGCAAGTGGCAATTTCGTCTGC
TGTATTCTGCAACAGGCCAGAAAAAGAGGGCTCTTTTTTTTTTCCAGTTGAAATAATTTA
TAATAGTTTTCTCACTAATTGCCACTGGGAGCAGTACTTATTACACCATATAACTGCTAG
AGTTGTCACTGATGAGCTTCTACTGTGAGCTAGATAATCTCCCATCCCAGGGGAAAGATG
GCAGACCTCTTTGCACCAAGCCTGCAATATTCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACGCATCCTGCTCCAGCAGTCTAGCCTAGAAAGAAAAAGGGACACCTAAGTAGCTTT
TGGAAAAACACAGAACTAAAAGTCCGTGCCTTCTGAGAGGAGCTTTGAGCACTAAGGATT
CTACAACACCATCCAAATGCAGCCAGGTGTGACCACTGGATCATCCAAATCGGGCTGTAC
CTGAAGCCAGTTTCCACGTACCTGGGGGACAGCTGGGCACCATAGGAAGCCCTCGGGATC
ACGTGGCAGGTGTAGAACATGGACCCTCAAAGACTGCTGCCCCTGGCGTTTAGAGGGGGC
ACCATAGTGGCTCCGGCCCAGGCCAAAATGAGATAGTAATTCATACCATGAGTCCCCAGA
CCTGACCAGGAGCAGGAACATACATCCAGGAGGTTCAGATGATTTCCTGTGTCTGTAAGA
AGCAGTCCACGATCATTTCACACCAGGCACGAACTTCAGACCTGCAGTGTCCAGCTCTTT
CAAGTGGAATGAGGGGTTATGAGTTGTCTCTGGGCTCTGTGTCAACAGCCCTGCTCGAAG
ACCAGCCCAGGCCTGGCAAAAGGCCCCTTCTGTCTCTTGCTGTGTCCTCCAGAGGCTTGG
CGAGCAGCTCTCCTACCTGGAAACCTCAAGGCTAGAGCATCACAGACCTAGGATCCTGCA
AGTGAGGCAGGAACCACCCCCCAACATCTCCACATAGCTTCAGAAATGTCATCACAGTTG
AGGTTTATACCTGCCAAAAGTAGATGCTTTCTTCCCTTCACCTGGAATAAGACAAGACTT
CCATAGGAAATCCCTTAATGTTTCCTGGTAGAAATCCATGCAAAAATATGGGATAAGTCA
TTTCATACAAAAACAGCAGCAAAGAATAAAGTACCAATGGCAAGTGGCAATTTCGTCTGC
TGTATTCTGCAACAGGCCAGAAAAAGAGGGCTCTTTTTTTTTTCCAGTTGAAATAATTTA
TAATAGTTTTCTCACTAATTGCCACTGGGAGCAGTACTTATTACACCATATAACTGCTAG
AGTTGTCACTGATGAGCTTCTACTGTGAGCTAGATAATCTCCCATCCCAGGGGAAAGATG
GCAGACCTCTTTGCACCAAGCCTGCAATATTCAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               263-382, - strand, RNAz p=0.526152

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-382, - strand, RNAz p=0.526152

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005902, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005902, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1116, gnl|bosTau2|chr10 (6317960-6319058)
               

               
               1-1116, gnl|Hg17|chr15 (65272366-65271158)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr10 (6317960-6319058)
               

               
               1-1116, gnl|Hg17|chr15 (65272366-65271158)

	1-1116, gnl\|bosTau2\|chr10 (6317960-6319058)
	1-1116, gnl\|Hg17\|chr15 (65272366-65271158)