Non-Coding RNA Search

Ss1.1-Pig4-TMW8040H13.5

Sequence:


               
               CAGAAACCCAGCAGAAATGCCAAGTGTGTGTGTATATATATATATATATAAATATATATA
TATATGATTCACGATGACACTAAATGCATCAGCATTCTAAAATACTGTGCTTCCAACCCT
GTCTTAAAATAC------------AGTTCCCTGGTGGGCTGGCAGTTAAGGATCCGGTGT
TGTCACAGCTGCGGCTCAGGTCACTCCTGTGAGGCAGCTTTGATCCCTGGCCTGGGAACT
TCTACATGCCTCGGGCATGGCCAAAAAAACAAAACAAAACAACAGTCCAGAAGGGGTTAC
GTTGGATTCGTGGCTTTGGTGCCTGCCTTGCCAGCAGGGTGAAGAAAGGTTTAAATTAAA
GAATTTAGTTCCTCTCTACCCCTTTCTTTCTCCCAGTCTTTGCATAGGAGAATGTCAGAC
TTTGTGAAATTATTGTTTCCGTGTTAAATTGAATATCGATTTTTTTTTTTTTTACGCTGA
CTTTGTATTGAGTCCTTTTGGAAAGATTAACATAATAAAATGCAGGATCTTTGTATCAAG
ACTTTGCACTTGCAAACCCTTTACAGCTTGAGTTACTGTTGCAGTGGGAACAATGTAAAT
GTCATTTTAAAAAAATTAAGGTTTCAGAAGAGCTGCCTCACACAGCTGAACACAGTGTGT
TTCTATTTCAGTTCTTGAAACTGTAACAGCCCACAGGCTATTCCTTTTAAAAGGGGTAAA
CTGTGCCTGGGGCTCATAGAATTAGTAAGTTCCTGTTAGAGGGGACAAGATCTTGTTTGC
CTTAAGTGTTTATAGATTTTCTATAACTTTCCACCTAAGTTATTAAAATGTGAATGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAACCCAGCAGAAATGCCAAGTGTGTGTGTATATATATATATATATAAATATATATA
TATATGATTCACGATGACACTAAATGCATCAGCATTCTAAAATACTGTGCTTCCAACCCT
GTCTTAAAATAC------------AGTTCCCTGGTGGGCTGGCAGTTAAGGATCCGGTGT
TGTCACAGCTGCGGCTCAGGTCACTCCTGTGAGGCAGCTTTGATCCCTGGCCTGGGAACT
TCTACATGCCTCGGGCATGGCCAAAAAAACAAAACAAAACAACAGTCCAGAAGGGGTTAC
GTTGGATTCGTGGCTTTGGTGCCTGCCTTGCCAGCAGGGTGAAGAAAGGTTTAAATTAAA
GAATTTAGTTCCTCTCTACCCCTTTCTTTCTCCCAGTCTTTGCATAGGAGAATGTCAGAC
TTTGTGAAATTATTGTTTCCGTGTTAAATTGAATATCGATTTTTTTTTTTTTTACGCTGA
CTTTGTATTGAGTCCTTTTGGAAAGATTAACATAATAAAATGCAGGATCTTTGTATCAAG
ACTTTGCACTTGCAAACCCTTTACAGCTTGAGTTACTGTTGCAGTGGGAACAATGTAAAT
GTCATTTTAAAAAAATTAAGGTTTCAGAAGAGCTGCCTCACACAGCTGAACACAGTGTGT
TTCTATTTCAGTTCTTGAAACTGTAACAGCCCACAGGCTATTCCTTTTAAAAGGGGTAAA
CTGTGCCTGGGGCTCATAGAATTAGTAAGTTCCTGTTAGAGGGGACAAGATCTTGTTTGC
CTTAAGTGTTTATAGATTTTCTATAACTTTCCACCTAAGTTATTAAAATGTGAATGTTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               319-416, - strand, RNAz p=0.562937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-416, - strand, RNAz p=0.562937

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               271-828, gnl|bosTau2|chr3 (23809667-23809131)
               

               
               271-828, gnl|canFam2|chr17 (56297607-56298283)
               

               
               271-828, gnl|dasNov1|scaffold_5457 (50957-50343)
               

               
               271-828, gnl|echTel1|scaffold_317377 (50935-50258)
               

               
               271-828, gnl|hg17|chr1 (115948088-115948744)
               

               
               271-828, gnl|Hg17|chr1 (115948104-115948644)
               

               
               271-828, gnl|mm7|chr3 (101950201-101949511)
               

               
               271-828, gnl|Mm7|chr3 (101950183-101949633)
               

               
               271-828, gnl|oryCun1|scaffold_192819 (37992-37378)
               

               
               271-828, gnl|panTro1|chr1 (115755600-115756256)
               

               
               271-828, gnl|rheMac2|chr1 (118675122-118675779)
               

               
               271-828, gnl|rn3|chr2 (197210199-197209548)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               271-828, gnl|bosTau2|chr3 (23809667-23809131)
               

               
               271-828, gnl|canFam2|chr17 (56297607-56298283)
               

               
               271-828, gnl|dasNov1|scaffold_5457 (50957-50343)
               

               
               271-828, gnl|echTel1|scaffold_317377 (50935-50258)
               

               
               271-828, gnl|hg17|chr1 (115948088-115948744)
               

               
               271-828, gnl|Hg17|chr1 (115948104-115948644)
               

               
               271-828, gnl|mm7|chr3 (101950201-101949511)
               

               
               271-828, gnl|Mm7|chr3 (101950183-101949633)
               

               
               271-828, gnl|oryCun1|scaffold_192819 (37992-37378)
               

               
               271-828, gnl|panTro1|chr1 (115755600-115756256)
               

               
               271-828, gnl|rheMac2|chr1 (118675122-118675779)
               

               
               271-828, gnl|rn3|chr2 (197210199-197209548)

	271-828, gnl\|bosTau2\|chr3 (23809667-23809131)
	271-828, gnl\|canFam2\|chr17 (56297607-56298283)
	271-828, gnl\|dasNov1\|scaffold_5457 (50957-50343)
	271-828, gnl\|echTel1\|scaffold_317377 (50935-50258)
	271-828, gnl\|hg17\|chr1 (115948088-115948744)
	271-828, gnl\|Hg17\|chr1 (115948104-115948644)
	271-828, gnl\|mm7\|chr3 (101950201-101949511)
	271-828, gnl\|Mm7\|chr3 (101950183-101949633)
	271-828, gnl\|oryCun1\|scaffold_192819 (37992-37378)
	271-828, gnl\|panTro1\|chr1 (115755600-115756256)
	271-828, gnl\|rheMac2\|chr1 (118675122-118675779)
	271-828, gnl\|rn3\|chr2 (197210199-197209548)