Non-Coding RNA Search

Ss1.1-Pig4-TMW8040K24.3

Sequence:


               
               ACTGTCACATTTCCCAAACCATTCTGATTCCAGCGGCATGTCCTCTGGCTCAGGGTCACT
AAATCAAATGGCACATTGACAAACGTCTTTTACAGAAAGGCAAATTCGTCTTCTTGAACG
AGGTAAGTACCAATGCGAGTGTGGTTGATACAGTTCGCCAAGTTAGACCCGGAAGTTTAT
CAAGATTTCTAGTGAACGGAACAGCATTACAAACACGACTAAAGGAAACAGGGCTGAACA
CCCACGGGCTCACAAAGAAACGGCACCCAAGGCTGCCCCACGCCCTGTGCCCCCCTCGCC
CGGCCCCCGCTCCTTGGCAGGCTGACTGCTCGCTCTTCGAACACAGAGCGAAGCTGCTGG
ACAAGCTGCTGGCCTGCAAGGAGCCTGGGCGCCCCTCGGGCTCAGGGCCCCTCTTCCTCC
TCATTCACCGCCACCGCAGCCAGGAAACGGCAGGACCTGGGAACCCTCCCGTTGACCCTG
AGCAGGTGCTCCAGGATTTTCAACCTGCTGGTCTCCGCGTGGGCCCGGGGACCCCAGAGG
AACTCGTAGCGGGCGGGGTCGCTGTGGGGCACCTGGCGGTACTCCAGGTACCCCTCCTGC
ACACACACCTGGGTGAGGAGCGCCCTGGGCTCCCCATAGATGCAGTGCACCATCCCGGCA
CACACCCCCATGACACCCAGCGTTTCCCAGACCACCTCCTCGGGGGCGCGGTCCCCCTGC
AGGGAAATCACCACCAGGACCACCACCAGGAGCCCGGTCTTGGGCAGGCTCAGCTCATGA
TCGCTCAGCACCCCATCCCAGGTGAGGCCCAGGGTGGGGAACAGGGTGTAGGTGTGCTCC
TCCGGGTCCACCTCCTTCAGATCCAAGCCAAAGACCAGCAGCATGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTCACATTTCCCAAACCATTCTGATTCCAGCGGCATGTCCTCTGGCTCAGGGTCACT
AAATCAAATGGCACATTGACAAACGTCTTTTACAGAAAGGCAAATTCGTCTTCTTGAACG
AGGTAAGTACCAATGCGAGTGTGGTTGATACAGTTCGCCAAGTTAGACCCGGAAGTTTAT
CAAGATTTCTAGTGAACGGAACAGCATTACAAACACGACTAAAGGAAACAGGGCTGAACA
CCCACGGGCTCACAAAGAAACGGCACCCAAGGCTGCCCCACGCCCTGTGCCCCCCTCGCC
CGGCCCCCGCTCCTTGGCAGGCTGACTGCTCGCTCTTCGAACACAGAGCGAAGCTGCTGG
ACAAGCTGCTGGCCTGCAAGGAGCCTGGGCGCCCCTCGGGCTCAGGGCCCCTCTTCCTCC
TCATTCACCGCCACCGCAGCCAGGAAACGGCAGGACCTGGGAACCCTCCCGTTGACCCTG
AGCAGGTGCTCCAGGATTTTCAACCTGCTGGTCTCCGCGTGGGCCCGGGGACCCCAGAGG
AACTCGTAGCGGGCGGGGTCGCTGTGGGGCACCTGGCGGTACTCCAGGTACCCCTCCTGC
ACACACACCTGGGTGAGGAGCGCCCTGGGCTCCCCATAGATGCAGTGCACCATCCCGGCA
CACACCCCCATGACACCCAGCGTTTCCCAGACCACCTCCTCGGGGGCGCGGTCCCCCTGC
AGGGAAATCACCACCAGGACCACCACCAGGAGCCCGGTCTTGGGCAGGCTCAGCTCATGA
TCGCTCAGCACCCCATCCCAGGTGAGGCCCAGGGTGGGGAACAGGGTGTAGGTGTGCTCC
TCCGGGTCCACCTCCTTCAGATCCAAGCCAAAGACCAGCAGCATGCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               518-677, - strand, RNAz p=0.988704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-677, - strand, RNAz p=0.988704

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               382-888, gnl|bosTau2|chrX (9872370-9871867)
               

               
               382-888, gnl|Hg17|chrX (148436419-148436988)
               

               
               382-888, gnl|Mm7|chrX (67769016-67769541)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               382-888, gnl|bosTau2|chrX (9872370-9871867)
               

               
               382-888, gnl|Hg17|chrX (148436419-148436988)
               

               
               382-888, gnl|Mm7|chrX (67769016-67769541)

	382-888, gnl\|bosTau2\|chrX (9872370-9871867)
	382-888, gnl\|Hg17\|chrX (148436419-148436988)
	382-888, gnl\|Mm7\|chrX (67769016-67769541)