Non-Coding RNA Search

Ss1.1-Pig4-TMW8040L02.5

Sequence:


               
               CCTCCTTGTCCGGCATACATCTTTGTGCAACAGGAAGGCTTTCACATGAAAGTGTCTCTT
GGTAACGGTGAAATGGGCGTCTCTGCCCATTTACAGCCTTGCAAGGCAGGAACCACACGG
TTTTTTACCAGCAATACTCACAGTTCGGTGGTATTGCAAGGCTTTGATCAGCTTAGAATA
GAAGGATTGCTTTGTGATGTGACTCTGGTACCAGGTGATGGAGATGAAATCTTCCCTGTT
CATCGAGCTATGATGGCGTCTGCTAGTGATTATTTCAAGGCTATGTTCACAGGTGGAATG
AAAGAACAAGATTTAATGTGCATTAAGCTTCATGGTGTGAACAAAGTTGGTCTGAAGAAA
ATAATTGATTTTATTTATACTGCAAAACTTTCTCTTAATATGGACAATCTTCAGGACACA
CTTGAAGCTGCCAGCTTTTTGCAAATTCTACCTGTTTTGGACTTCTGTAAAGTGTTTCTT
ATTTCAGGAGTCTCTTTAGATAACTGTGTTGAGGTTGGACGAATTGCTAACACCTACAAT
CTTATAGAAGTAGATAAATATGTCAATAATTTCATCCTGAAGAATTTTCCTGCATTATTG
AGTACTGGGGAGTTTCTAAAACTCCCTTTTGAACGGCTTGCCTTTGTGCTTTCCAGCAAC
AGTCTTAAGCACTGTACTGAACTTGAGCTTTTCAAGGCTGCGTGTCGCTGGCTAAGGTTG
GAAGACCCTCGGATGGATTATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCTTGTCCGGCATACATCTTTGTGCAACAGGAAGGCTTTCACATGAAAGTGTCTCTT
GGTAACGGTGAAATGGGCGTCTCTGCCCATTTACAGCCTTGCAAGGCAGGAACCACACGG
TTTTTTACCAGCAATACTCACAGTTCGGTGGTATTGCAAGGCTTTGATCAGCTTAGAATA
GAAGGATTGCTTTGTGATGTGACTCTGGTACCAGGTGATGGAGATGAAATCTTCCCTGTT
CATCGAGCTATGATGGCGTCTGCTAGTGATTATTTCAAGGCTATGTTCACAGGTGGAATG
AAAGAACAAGATTTAATGTGCATTAAGCTTCATGGTGTGAACAAAGTTGGTCTGAAGAAA
ATAATTGATTTTATTTATACTGCAAAACTTTCTCTTAATATGGACAATCTTCAGGACACA
CTTGAAGCTGCCAGCTTTTTGCAAATTCTACCTGTTTTGGACTTCTGTAAAGTGTTTCTT
ATTTCAGGAGTCTCTTTAGATAACTGTGTTGAGGTTGGACGAATTGCTAACACCTACAAT
CTTATAGAAGTAGATAAATATGTCAATAATTTCATCCTGAAGAATTTTCCTGCATTATTG
AGTACTGGGGAGTTTCTAAAACTCCCTTTTGAACGGCTTGCCTTTGTGCTTTCCAGCAAC
AGTCTTAAGCACTGTACTGAACTTGAGCTTTTCAAGGCTGCGTGTCGCTGGCTAAGGTTG
GAAGACCCTCGGATGGATTATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886793|ref|XP_600573.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886793|ref|XP_600573.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               3-161, - strand, RNAz p=0.958862
               

               
               402-521, - strand, RNAz p=0.725486
               

               
               562-721, + strand, RNAz p=0.692377

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-161, - strand, RNAz p=0.958862
               

               
               402-521, - strand, RNAz p=0.725486
               

               
               562-721, + strand, RNAz p=0.692377

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC039133, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC039133, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-744, gnl|bosTau2|chr8 (12526417-12527158)
               

               
               3-744, gnl|Hg17|chr9 (21324901-21324160)
               

               
               3-744, gnl|Mm7|chr4 (88125767-88125030)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-744, gnl|bosTau2|chr8 (12526417-12527158)
               

               
               3-744, gnl|Hg17|chr9 (21324901-21324160)
               

               
               3-744, gnl|Mm7|chr4 (88125767-88125030)

	3-161, - strand, RNAz p=0.958862
	402-521, - strand, RNAz p=0.725486
	562-721, + strand, RNAz p=0.692377

	3-744, gnl\|bosTau2\|chr8 (12526417-12527158)
	3-744, gnl\|Hg17\|chr9 (21324901-21324160)
	3-744, gnl\|Mm7\|chr4 (88125767-88125030)