Non-Coding RNA Search

Ss1.1-Pig4-TMW8040O13.5

Sequence:


               
               TATGATCTTGTAGAGAAACAACTTCTCATTTTCAGAAATTTGACCTATACTCCACTACAT
CCCAAAGGATGGATTTTTAAAACAGGTTGTAATTATGGAAGAAAAAAATGCCAAAGAAGG
GACAAGTTTGGTAATGATTTTTTTTGATGCTTTTTGATGCCTGTCAAAAAGAATACAGAA
TCTCTAGAAATTAATTTAAAAAACTTCCCTCCAAATTTAAAGATACTGCATTTAAATTGT
ATGATGAGTCTAATGCTTCAAAACTGGTTAGGATTTGGTGTGGTTCCAAATAACTTGGTT
TAAAAACAAATTTATTGTAAAAAAGTTATCTTCAGTGAAGACAAAGGCATTTTTTTTCCT
TCCCCCTTTTTTTTTGGCTTAGGAGAAGATGAGAATTCCTGTTTGGGAGACAAGATTCCC
AAAAGAAGATAGTCCTTTGGCAGTAAGAATAAACAGCCTTGGCAGAAAGCCACTCTCCAA
AGGAAAAGGACTGAGGGCACATTTTATTTTATTTAAATTTTTTTTGTTTTGTTTTTAGAG
CTGCACCTGCTGTGCTTATTATAAAACTATGAGAGCTGGGCCCACACTAAGCACCTGAGA
CAAGTAGTGAGCTACTTTGGAATTTACTGGGCACCAGGTAAAATTCTAGTCATCTCTCAT
TCCCAGACCCTAGAGGTCCTGAACAGCAGCCCCTCATATGTTCTCCTTTTCCTTGTAGAC
AATTCTTCCTCTCTTCATGAGGATGAAGAGGTAGAGATGGAGGCCATCAGCTGGCAGGCC
AGCAGTCCAGCCATGAACGGACATCCTGCCACTCCAGTGACCTCTGCTCGTTTCCCTAGC
TGGGTCACTTTTGATGACAATGAAGTCAGTTGCCCTTTGCCACCAGTCACCTCGCCTCTG
AAGCCAAAAACACCATCTATTGCCTCTGTGATCCCAGATGTACCTTATAACTCAACTGGG
TCATTTAAGAAGAGAGAACGTCCCAAGAGCACTTTGATGAACTTCTCCAAAGTCCAGAAG
CTGGACATTTCCTCCTTAAACCACCCACCTTCTGTGCCTGAGGCTCCACCTTGGAGGGCA
ACTAATCCTTTTCTGAATGAGACTCTACAGGACATACAACCCTCCCCTATCAACCCTTTC
CGCGCTTTCTTTGAGGAGCAAGAGAGGCGCTCCCAAAGCAATTCTGTGTCTGGTGCCACA
GGCAAAAGCCAAAGAGATTCCCTCATTATCATCTACCAGGACGCCATCAGCTTTGACGAT
TCAAGCAAAACCCAGTCACACTCTGATGCTGTCGAAAAACTCAAACGACTCCAAATTGAG
GATCCTGATCACTTGGGCAGGGTGACACTCCCTGATGATGACCCAATAGCCTGGCTTGAA
CTAGGTGACCACCCGCCAGGTTCCGTGCTGTCCCAGCCGAGGGATGGGTGGCCCATGATG
CTTAGGATCCCCGAGAAGAAAAAATTATGTCCTCCAGGCACTGGGGACCCATCTACATCA
AACTGACGGATAGTGGTTACCTGCAACTATATTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGATCTTGTAGAGAAACAACTTCTCATTTTCAGAAATTTGACCTATACTCCACTACAT
CCCAAAGGATGGATTTTTAAAACAGGTTGTAATTATGGAAGAAAAAAATGCCAAAGAAGG
GACAAGTTTGGTAATGATTTTTTTTGATGCTTTTTGATGCCTGTCAAAAAGAATACAGAA
TCTCTAGAAATTAATTTAAAAAACTTCCCTCCAAATTTAAAGATACTGCATTTAAATTGT
ATGATGAGTCTAATGCTTCAAAACTGGTTAGGATTTGGTGTGGTTCCAAATAACTTGGTT
TAAAAACAAATTTATTGTAAAAAAGTTATCTTCAGTGAAGACAAAGGCATTTTTTTTCCT
TCCCCCTTTTTTTTTGGCTTAGGAGAAGATGAGAATTCCTGTTTGGGAGACAAGATTCCC
AAAAGAAGATAGTCCTTTGGCAGTAAGAATAAACAGCCTTGGCAGAAAGCCACTCTCCAA
AGGAAAAGGACTGAGGGCACATTTTATTTTATTTAAATTTTTTTTGTTTTGTTTTTAGAG
CTGCACCTGCTGTGCTTATTATAAAACTATGAGAGCTGGGCCCACACTAAGCACCTGAGA
CAAGTAGTGAGCTACTTTGGAATTTACTGGGCACCAGGTAAAATTCTAGTCATCTCTCAT
TCCCAGACCCTAGAGGTCCTGAACAGCAGCCCCTCATATGTTCTCCTTTTCCTTGTAGAC
AATTCTTCCTCTCTTCATGAGGATGAAGAGGTAGAGATGGAGGCCATCAGCTGGCAGGCC
AGCAGTCCAGCCATGAACGGACATCCTGCCACTCCAGTGACCTCTGCTCGTTTCCCTAGC
TGGGTCACTTTTGATGACAATGAAGTCAGTTGCCCTTTGCCACCAGTCACCTCGCCTCTG
AAGCCAAAAACACCATCTATTGCCTCTGTGATCCCAGATGTACCTTATAACTCAACTGGG
TCATTTAAGAAGAGAGAACGTCCCAAGAGCACTTTGATGAACTTCTCCAAAGTCCAGAAG
CTGGACATTTCCTCCTTAAACCACCCACCTTCTGTGCCTGAGGCTCCACCTTGGAGGGCA
ACTAATCCTTTTCTGAATGAGACTCTACAGGACATACAACCCTCCCCTATCAACCCTTTC
CGCGCTTTCTTTGAGGAGCAAGAGAGGCGCTCCCAAAGCAATTCTGTGTCTGGTGCCACA
GGCAAAAGCCAAAGAGATTCCCTCATTATCATCTACCAGGACGCCATCAGCTTTGACGAT
TCAAGCAAAACCCAGTCACACTCTGATGCTGTCGAAAAACTCAAACGACTCCAAATTGAG
GATCCTGATCACTTGGGCAGGGTGACACTCCCTGATGATGACCCAATAGCCTGGCTTGAA
CTAGGTGACCACCCGCCAGGTTCCGTGCTGTCCCAGCCGAGGGATGGGTGGCCCATGATG
CTTAGGATCCCCGAGAAGAAAAAATTATGTCCTCCAGGCACTGGGGACCCATCTACATCA
AACTGACGGATAGTGGTTACCTGCAACTATATTATG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               384-502, - strand, RNAz p=0.835551
               

               
               664-884, - strand, RNAz p=0.93877
               

               
               925-1044, - strand, RNAz p=0.612363

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-502, - strand, RNAz p=0.835551
               

               
               664-884, - strand, RNAz p=0.93877
               

               
               925-1044, - strand, RNAz p=0.612363

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               211-502, gnl|bosTau2|chr10 (64335552-64335251)
               

               
               211-502, gnl|Hg17|chr14 (80817901-80817640)
               

               
               211-502, gnl|Mm7|chr12 (89136829-89136560)
               


               
               547-1534, gnl|bosTau2|chr10 (64333099-64332108)
               

               
               547-1534, gnl|Hg17|chr14 (80815021-80814020)
               

               
               547-1534, gnl|Mm7|chr12 (89131168-89130205)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-502, gnl|bosTau2|chr10 (64335552-64335251)
               

               
               211-502, gnl|Hg17|chr14 (80817901-80817640)
               

               
               211-502, gnl|Mm7|chr12 (89136829-89136560)
               


               
               547-1534, gnl|bosTau2|chr10 (64333099-64332108)
               

               
               547-1534, gnl|Hg17|chr14 (80815021-80814020)
               

               
               547-1534, gnl|Mm7|chr12 (89131168-89130205)

	384-502, - strand, RNAz p=0.835551
	664-884, - strand, RNAz p=0.93877
	925-1044, - strand, RNAz p=0.612363

	211-502, gnl\|bosTau2\|chr10 (64335552-64335251)
	211-502, gnl\|Hg17\|chr14 (80817901-80817640)
	211-502, gnl\|Mm7\|chr12 (89136829-89136560)

	547-1534, gnl\|bosTau2\|chr10 (64333099-64332108)
	547-1534, gnl\|Hg17\|chr14 (80815021-80814020)
	547-1534, gnl\|Mm7\|chr12 (89131168-89130205)