Non-Coding RNA Search

Ss1.1-Pig4-TMW8040O20.3

Sequence:


               
               TGGGATTAAGGGCAGGCGAAAATGAAGAATCCCACATTTTTCCGCACGTTCGCATGTGTA
TCTGTGCTTTAGGATTTTTGAAACATAGTTGATTGTTGTTTGCTCTTCCTAATCTCGTTT
CTTTTTATACGTATCATATATACAGCATGCCCACACACAATCCATGATCGATACTTTTTA
TTTTTTATATGTTCCCGTGTACACTAATGGTTGTGTGTGTGTATGTGTTTGAATGAAGAA
GACGACTCCCATGTCTAAGGGGCCCATCTGAGCCACTGGGGTGGAGGAGATAATGAATTC
AGGGGGTCTTTGCCAAGAGCATCAAATAGATGTCCTTTAGGGATTAAGTGTACCTGTCTG
GGCTTCAGAATGCACGTCCTCATCTGTTTCCTCCGAACAGAACATTTATTCCTCCAAATG
CTTCTGAGAGATGTGTTTGATCTTTGATAAATCTCTCCTGTGCATATCTTCAAATTTAGA
GATAGGAACCTTATCAGAGCTGTTTCTGTTCTGTGCTGCTCATGGACTCGCCTATGCTAA
TCACCTTGACATTTTGTATTCATGTGGTGTGAGAGGAACGCTTTATCCTGCATTGATGGG
GACACTTGTTTCTAATGAGAAATCTGATGAAATCAGGTGCTTTGAATACAGAACATCTGC
AAAACTTTTGTAGCGTTTTAATCCTCCCGGAGTTGGCGTCTTCCCTTTAGGAGAAGACCA
TGGTTCCTTTCAATGCCAAACTACATCTGATGGTGATTTCTAGCTGATCAGGATTTTACT
TTAAAAGCCATCAAACGGGAGAAGCGACATTTTCCAGTGGGCAGCTAGGAAAACGAGTCT
TGATCTGTTTCAGGGTCTGATCCCCTCTTCCCTTCTGTTTTATTCACAGAAGATCCTCTC
GTCAGAAATTCAGGGGTAGGGGGAAGAAGGCTTTTCATTCTTATTCTCATTTTTCTGACA
GGCTTACTCTACGAGTCATCATTAATGGAGAAAACGCTGCCTATTAGGTAATCTGTGGCT
TCCCCCAGCCTGGTGGTATTTCATTATCATTTAAATATGCCACCCACGGCTCCTTCTAAA
ACCTTTTGAATGGAGGGTCATTAGTAGATTTTTTTTCCCCCTAAATTATGCTCAGCGGTT
GTTAAAGGGAGATGGTCTCCAGTGAAGTCTTTCCACATTGAAAAACCTGAAGTAGGGATT
GAGATAATTATCTGGATAATTCAGCCTCCTGTTATCGCTCCTGAAATGGAACATATTTCA
CCTCCTCTTTCTTTCTTCCCTTCTTTCATCCCGTATGGGTTATCGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGATTAAGGGCAGGCGAAAATGAAGAATCCCACATTTTTCCGCACGTTCGCATGTGTA
TCTGTGCTTTAGGATTTTTGAAACATAGTTGATTGTTGTTTGCTCTTCCTAATCTCGTTT
CTTTTTATACGTATCATATATACAGCATGCCCACACACAATCCATGATCGATACTTTTTA
TTTTTTATATGTTCCCGTGTACACTAATGGTTGTGTGTGTGTATGTGTTTGAATGAAGAA
GACGACTCCCATGTCTAAGGGGCCCATCTGAGCCACTGGGGTGGAGGAGATAATGAATTC
AGGGGGTCTTTGCCAAGAGCATCAAATAGATGTCCTTTAGGGATTAAGTGTACCTGTCTG
GGCTTCAGAATGCACGTCCTCATCTGTTTCCTCCGAACAGAACATTTATTCCTCCAAATG
CTTCTGAGAGATGTGTTTGATCTTTGATAAATCTCTCCTGTGCATATCTTCAAATTTAGA
GATAGGAACCTTATCAGAGCTGTTTCTGTTCTGTGCTGCTCATGGACTCGCCTATGCTAA
TCACCTTGACATTTTGTATTCATGTGGTGTGAGAGGAACGCTTTATCCTGCATTGATGGG
GACACTTGTTTCTAATGAGAAATCTGATGAAATCAGGTGCTTTGAATACAGAACATCTGC
AAAACTTTTGTAGCGTTTTAATCCTCCCGGAGTTGGCGTCTTCCCTTTAGGAGAAGACCA
TGGTTCCTTTCAATGCCAAACTACATCTGATGGTGATTTCTAGCTGATCAGGATTTTACT
TTAAAAGCCATCAAACGGGAGAAGCGACATTTTCCAGTGGGCAGCTAGGAAAACGAGTCT
TGATCTGTTTCAGGGTCTGATCCCCTCTTCCCTTCTGTTTTATTCACAGAAGATCCTCTC
GTCAGAAATTCAGGGGTAGGGGGAAGAAGGCTTTTCATTCTTATTCTCATTTTTCTGACA
GGCTTACTCTACGAGTCATCATTAATGGAGAAAACGCTGCCTATTAGGTAATCTGTGGCT
TCCCCCAGCCTGGTGGTATTTCATTATCATTTAAATATGCCACCCACGGCTCCTTCTAAA
ACCTTTTGAATGGAGGGTCATTAGTAGATTTTTTTTCCCCCTAAATTATGCTCAGCGGTT
GTTAAAGGGAGATGGTCTCCAGTGAAGTCTTTCCACATTGAAAAACCTGAAGTAGGGATT
GAGATAATTATCTGGATAATTCAGCCTCCTGTTATCGCTCCTGAAATGGAACATATTTCA
CCTCCTCTTTCTTTCTTCCCTTCTTTCATCCCGTATGGGTTATCGCCG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               279-513, + strand, RNAz p=0.999985
               

               
               1009-1128, - strand, RNAz p=0.722754
               

               
               1010-1127, - strand, RNAz p=0.85893
               

               
               1167-1303, - strand, RNAz p=0.850907

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-513, + strand, RNAz p=0.999985
               

               
               1009-1128, - strand, RNAz p=0.722754
               

               
               1010-1127, - strand, RNAz p=0.85893
               

               
               1167-1303, - strand, RNAz p=0.850907

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               221-875, gnl|bosTau2|chr1 (60862844-60862186)
               

               
               221-875, gnl|Hg17|chr16 (6332397-6333151)
               

               
               221-875, gnl|Mm7|chr16 (5871148-5871699)
               


               
               890-1303, gnl|bosTau2|chr1 (60862151-60861745)
               

               
               890-1303, gnl|canFam2|chr6 (38417859-38417435)
               

               
               890-1303, gnl|echTel1|scaffold_171369 (2216-1799)
               

               
               890-1303, gnl|hg17|chr16 (6333085-6333509)
               

               
               890-1303, gnl|Hg17|chr16 (6333166-6333568)
               

               
               890-1303, gnl|loxAfr1|scaffold_30159 (11410-11015)
               

               
               890-1303, gnl|mm7|chr16 (5871625-5872053)
               

               
               890-1303, gnl|Mm7|chr16 (5871714-5872113)
               

               
               890-1303, gnl|monDom2|scaffold_17 (40643736-40643320)
               

               
               890-1303, gnl|oryCun1|scaffold_102620 (5699-6110)
               

               
               890-1303, gnl|panTro1|chr18 (6451049-6451472)
               

               
               890-1303, gnl|rheMac2|chr20 (6515925-6516353)
               

               
               890-1303, gnl|rn3|chr10 (9444283-9443854)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-875, gnl|bosTau2|chr1 (60862844-60862186)
               

               
               221-875, gnl|Hg17|chr16 (6332397-6333151)
               

               
               221-875, gnl|Mm7|chr16 (5871148-5871699)
               


               
               890-1303, gnl|bosTau2|chr1 (60862151-60861745)
               

               
               890-1303, gnl|canFam2|chr6 (38417859-38417435)
               

               
               890-1303, gnl|echTel1|scaffold_171369 (2216-1799)
               

               
               890-1303, gnl|hg17|chr16 (6333085-6333509)
               

               
               890-1303, gnl|Hg17|chr16 (6333166-6333568)
               

               
               890-1303, gnl|loxAfr1|scaffold_30159 (11410-11015)
               

               
               890-1303, gnl|mm7|chr16 (5871625-5872053)
               

               
               890-1303, gnl|Mm7|chr16 (5871714-5872113)
               

               
               890-1303, gnl|monDom2|scaffold_17 (40643736-40643320)
               

               
               890-1303, gnl|oryCun1|scaffold_102620 (5699-6110)
               

               
               890-1303, gnl|panTro1|chr18 (6451049-6451472)
               

               
               890-1303, gnl|rheMac2|chr20 (6515925-6516353)
               

               
               890-1303, gnl|rn3|chr10 (9444283-9443854)

	279-513, + strand, RNAz p=0.999985
	1009-1128, - strand, RNAz p=0.722754
	1010-1127, - strand, RNAz p=0.85893
	1167-1303, - strand, RNAz p=0.850907

	221-875, gnl\|bosTau2\|chr1 (60862844-60862186)
	221-875, gnl\|Hg17\|chr16 (6332397-6333151)
	221-875, gnl\|Mm7\|chr16 (5871148-5871699)

	890-1303, gnl\|bosTau2\|chr1 (60862151-60861745)
	890-1303, gnl\|canFam2\|chr6 (38417859-38417435)
	890-1303, gnl\|echTel1\|scaffold_171369 (2216-1799)
	890-1303, gnl\|hg17\|chr16 (6333085-6333509)
	890-1303, gnl\|Hg17\|chr16 (6333166-6333568)
	890-1303, gnl\|loxAfr1\|scaffold_30159 (11410-11015)
	890-1303, gnl\|mm7\|chr16 (5871625-5872053)
	890-1303, gnl\|Mm7\|chr16 (5871714-5872113)
	890-1303, gnl\|monDom2\|scaffold_17 (40643736-40643320)
	890-1303, gnl\|oryCun1\|scaffold_102620 (5699-6110)
	890-1303, gnl\|panTro1\|chr18 (6451049-6451472)
	890-1303, gnl\|rheMac2\|chr20 (6515925-6516353)
	890-1303, gnl\|rn3\|chr10 (9444283-9443854)