Non-Coding RNA Search

Ss1.1-Pig4-TMW8040P18.3

Sequence:


               
               TCTGAGTTGTCTAAACTAGAGTCTGTTAGAATGAAAGTAGCAAAGGAAAGGGGGCTTTCA
AGCCACATAGAAGTGGTAGATAAGGAAGGCAGGCCTAAACCCAGGAAGCACCTAAAACCT
GAGCAGAGTGCTGACAGCGTAAGCGCTGTGGATCTGGAGAAGTTGGAAGCAAGAAAAAGA
CGTTTTGCAGATTCCACTTTGAAAGTAGAAAGACAAAAATCAGAAGTCAAGAAAAGTAGT
CCAGAGATGGAAGATGCTCGAGTGCTTTTAAAGAAGCAGCCTGACTTATCATCTAGAGAT
GTCATTCTGCTGAGGGAAGGGGAGTCTGAAAAAAAGCCTGTGAAGAAAAAATTGGCATTG
ATATTGATCACACACAGAGTTACCGAAAACAAATGGAACAGAGTCGTAGAAAACAGCAGA
TGGAGATGGAAATAGCCAAGTCTGAAAAGTTTGGCAGTCCAAAAAAAGATGTGGATGAAT
ATGAAAGACGTAGTCTTGTTCACGAGGTAGGCAAACCCCCTCAGGATGTCACTGACGACT
CTCCTCCCAGCAAAAAGAAAAGGATGGACCATGTTGATTTTGACGTCTGCACCAAGAGAG
AGAGGAACCAGTAGGTGAATCTGTGGAAAATCAAGAAATCCAGTCCAAAAAACCCACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAGTTGTCTAAACTAGAGTCTGTTAGAATGAAAGTAGCAAAGGAAAGGGGGCTTTCA
AGCCACATAGAAGTGGTAGATAAGGAAGGCAGGCCTAAACCCAGGAAGCACCTAAAACCT
GAGCAGAGTGCTGACAGCGTAAGCGCTGTGGATCTGGAGAAGTTGGAAGCAAGAAAAAGA
CGTTTTGCAGATTCCACTTTGAAAGTAGAAAGACAAAAATCAGAAGTCAAGAAAAGTAGT
CCAGAGATGGAAGATGCTCGAGTGCTTTTAAAGAAGCAGCCTGACTTATCATCTAGAGAT
GTCATTCTGCTGAGGGAAGGGGAGTCTGAAAAAAAGCCTGTGAAGAAAAAATTGGCATTG
ATATTGATCACACACAGAGTTACCGAAAACAAATGGAACAGAGTCGTAGAAAACAGCAGA
TGGAGATGGAAATAGCCAAGTCTGAAAAGTTTGGCAGTCCAAAAAAAGATGTGGATGAAT
ATGAAAGACGTAGTCTTGTTCACGAGGTAGGCAAACCCCCTCAGGATGTCACTGACGACT
CTCCTCCCAGCAAAAAGAAAAGGATGGACCATGTTGATTTTGACGTCTGCACCAAGAGAG
AGAGGAACCAGTAGGTGAATCTGTGGAAAATCAAGAAATCCAGTCCAAAAAACCCACTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               200-319, - strand, RNAz p=0.887199

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, - strand, RNAz p=0.887199

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-353, gnl|bosTau2|chr16 (36850561-36850914)
               

               
               1-353, gnl|Hg17|chr1 (16000820-16001173)
               

               
               1-353, gnl|Mm7|chr4 (140856908-140856576)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr16 (36850561-36850914)
               

               
               1-353, gnl|Hg17|chr1 (16000820-16001173)
               

               
               1-353, gnl|Mm7|chr4 (140856908-140856576)

	1-353, gnl\|bosTau2\|chr16 (36850561-36850914)
	1-353, gnl\|Hg17\|chr1 (16000820-16001173)
	1-353, gnl\|Mm7\|chr4 (140856908-140856576)