Non-Coding RNA Search

Ss1.1-Pig4-TMW8041D09.3

Sequence:


               
               TCTCTATACCCAGTGATCTCCCAGCTCTCCAGGGTTCATTGCTGAGGAGCCACCTCCGTC
CTGATCCCAGCTATCTGTTGATGTACAAGAGGGGTGACAGCAGGACTCCAGCATCGACAC
AGTAACTGGAAAGGCATGGGGCTGTAGGCCCGGCCCCTATTTCTGGGTCCATACCAGCTT
TATTATTAATGACAGTGTAAGGGGCCCTGGGTGGCTCCAAAGCCTGACAACTCACCACCT
GGGCAGGCATGGCCATGGAGGCCTGCTCGTTGTTGTCCTCTCCCAGAAGGCAGCCTGGGG
TGCAGGTATGGTGGACTGTCCACCAGAGAGACCACACCAGGGAGGAAAGCAGTGCCAATC
CCTGAAGCCCCAGAGGCGGCCACGGTTAGAATAAGGGAAGAGGGTTCACGGGTCTCTGTT
CGTGGTCAGCTTCAATCCCTGCTGAGCCCAAGCCTGAGGTCTAAGGTGTGTGCTAAGCCA
CAGGGCCCTTGAGAAATGTCCTTGCATGATGGGTTTGAAACTGGTCTTCCTCCAGCCAGC
TTGGCCTGAGAGCAGAGGTACCCACCAGCCCCAAAGGCAGTTCTGTTTTCACATTGGTGT
GTGGGGAGGTATGTTACCTGAACAGAGTCGGACCCAGCACCTCCCCGCTGCTCGCTGAGC
CCATCTCCCTCTGCCCCAGACCTCCGCCATGCCTGATCATGTCCTGGGAGGGCTGGACCC
AGCCCTGGCCAGGCTGTGTGGGAATAACCTGCCCAGTGCTACACTCTGTGTCCCCACACC
AGTGACCAAGTGGCCTTCTCTCTGCAGCGGTTGTTGACAGCATAATATTCTGCTTAGCCC
CAAACAGACAGCGTTGCAACTGATACCAGAATGAGACAAGGACTAGTAGGAGGGAGGCTG
GGCGCAAGCCTCTACCTCTTTGAATAAATCGCGCTCTGCTCCACCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTATACCCAGTGATCTCCCAGCTCTCCAGGGTTCATTGCTGAGGAGCCACCTCCGTC
CTGATCCCAGCTATCTGTTGATGTACAAGAGGGGTGACAGCAGGACTCCAGCATCGACAC
AGTAACTGGAAAGGCATGGGGCTGTAGGCCCGGCCCCTATTTCTGGGTCCATACCAGCTT
TATTATTAATGACAGTGTAAGGGGCCCTGGGTGGCTCCAAAGCCTGACAACTCACCACCT
GGGCAGGCATGGCCATGGAGGCCTGCTCGTTGTTGTCCTCTCCCAGAAGGCAGCCTGGGG
TGCAGGTATGGTGGACTGTCCACCAGAGAGACCACACCAGGGAGGAAAGCAGTGCCAATC
CCTGAAGCCCCAGAGGCGGCCACGGTTAGAATAAGGGAAGAGGGTTCACGGGTCTCTGTT
CGTGGTCAGCTTCAATCCCTGCTGAGCCCAAGCCTGAGGTCTAAGGTGTGTGCTAAGCCA
CAGGGCCCTTGAGAAATGTCCTTGCATGATGGGTTTGAAACTGGTCTTCCTCCAGCCAGC
TTGGCCTGAGAGCAGAGGTACCCACCAGCCCCAAAGGCAGTTCTGTTTTCACATTGGTGT
GTGGGGAGGTATGTTACCTGAACAGAGTCGGACCCAGCACCTCCCCGCTGCTCGCTGAGC
CCATCTCCCTCTGCCCCAGACCTCCGCCATGCCTGATCATGTCCTGGGAGGGCTGGACCC
AGCCCTGGCCAGGCTGTGTGGGAATAACCTGCCCAGTGCTACACTCTGTGTCCCCACACC
AGTGACCAAGTGGCCTTCTCTCTGCAGCGGTTGTTGACAGCATAATATTCTGCTTAGCCC
CAAACAGACAGCGTTGCAACTGATACCAGAATGAGACAAGGACTAGTAGGAGGGAGGCTG
GGCGCAAGCCTCTACCTCTTTGAATAAATCGCGCTCTGCTCCACCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               522-618, + strand, RNAz p=0.99812

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               522-618, + strand, RNAz p=0.99812

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-946, gnl|bosTau2|chr9 (21455761-21454814)
               

               
               3-946, gnl|Hg17|chr3 (44932792-44931759)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-946, gnl|bosTau2|chr9 (21455761-21454814)
               

               
               3-946, gnl|Hg17|chr3 (44932792-44931759)

	3-946, gnl\|bosTau2\|chr9 (21455761-21454814)
	3-946, gnl\|Hg17\|chr3 (44932792-44931759)