Non-Coding RNA Search

Ss1.1-Pig4-TMW8041D23.3

Sequence:


               
               AGAAAGGGCAGCAGGCTAAAGTGGAGCCACAGAGAGCCTTCATAGAGAGTGGTTTCCAAA
CCCAGCAATGACCCTAGGGTGGTTAGGGAAGGTTGGCGGGCTCCTGGCAGGTGAAGTCAG
GCCTTTTTCCTTTCGATGGTGACCTTAATCATTTTCACCCTGTAGGTTGAGACTTCCGGC
TCCCACCAGCATCTCCAGCTATACTGCCCCTTTACAGGGTGCTAGTCAGCACGAGGAATT
GGAGTTCATGGGCTTGGGAGGTGGCAGGAAGCTTTGGCTGGCACCGCCAAACTGCCTTAG
TGAATTTGGCCCTTCCCAGGCAGGTGGGCGAGGCACGGAGGGCAAGTGGCCCTGCCTTTC
CTGGCAGCCTGGCCAACCTCGTGGGGGCATCACTAGTTTGATGACAGGAATCGGTATTAT
TCATTGAATTCCTTCCACCCCACCCTGGCCCCCCTTAAGAAGGAGCTCATGGTGCAAAGC
CCAGGAGGGGCCTTACAGTATGAAGACCTCTCTGGGTAGAAGCAAGGGACTCCTCTACCA
CCTCTGGGAGAGTCAGTAGTTTGGAGACTTTTACCTTCAGGGCCAAGGCAGCAGACTAAT
GGGGAGAATGGAGGGTGGGTGGGTTTTCCTGAGAGACTTTGTATAATGCTGAATGTGTCC
AAAGGGACGAGTTTGCGGAACCTCATGTTGGTATATTAAAGAAATAATAAAATAAAAAAG
CACTTTAGGTTATTTTATCTTTAACCCAATTGCTGCAATTTCTTTTGTGTGTGTGTGTAT
ATATATGTATGTACGTATGTGTATATATACATATATATACTTTCCATAAAGTTTTATTTT
TTGCTCAGAAAAAAAAAAAGTTAAATTGAGATGTTAAAAAAAAAGCACTTACCTTGGGGC
AATATGTGTAGCTTGACGGTCGTTGTCCCATGTGGCCCTGGCCTGGCGGCGTTTTTCCAC
TCCATCAGCCCTGTTCTAGGAGGCTGTCCACAGGGAAACACTATTATGCATTCTCAGCAA
CTGCTCAATCTATGCAAGCCTTCCCTGTGTGCCCAAGGGCGCCCCCTCAGGCTCTCTGAA
AAACTGCTGCGGGTCCTGTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAGGGCAGCAGGCTAAAGTGGAGCCACAGAGAGCCTTCATAGAGAGTGGTTTCCAAA
CCCAGCAATGACCCTAGGGTGGTTAGGGAAGGTTGGCGGGCTCCTGGCAGGTGAAGTCAG
GCCTTTTTCCTTTCGATGGTGACCTTAATCATTTTCACCCTGTAGGTTGAGACTTCCGGC
TCCCACCAGCATCTCCAGCTATACTGCCCCTTTACAGGGTGCTAGTCAGCACGAGGAATT
GGAGTTCATGGGCTTGGGAGGTGGCAGGAAGCTTTGGCTGGCACCGCCAAACTGCCTTAG
TGAATTTGGCCCTTCCCAGGCAGGTGGGCGAGGCACGGAGGGCAAGTGGCCCTGCCTTTC
CTGGCAGCCTGGCCAACCTCGTGGGGGCATCACTAGTTTGATGACAGGAATCGGTATTAT
TCATTGAATTCCTTCCACCCCACCCTGGCCCCCCTTAAGAAGGAGCTCATGGTGCAAAGC
CCAGGAGGGGCCTTACAGTATGAAGACCTCTCTGGGTAGAAGCAAGGGACTCCTCTACCA
CCTCTGGGAGAGTCAGTAGTTTGGAGACTTTTACCTTCAGGGCCAAGGCAGCAGACTAAT
GGGGAGAATGGAGGGTGGGTGGGTTTTCCTGAGAGACTTTGTATAATGCTGAATGTGTCC
AAAGGGACGAGTTTGCGGAACCTCATGTTGGTATATTAAAGAAATAATAAAATAAAAAAG
CACTTTAGGTTATTTTATCTTTAACCCAATTGCTGCAATTTCTTTTGTGTGTGTGTGTAT
ATATATGTATGTACGTATGTGTATATATACATATATATACTTTCCATAAAGTTTTATTTT
TTGCTCAGAAAAAAAAAAAGTTAAATTGAGATGTTAAAAAAAAAGCACTTACCTTGGGGC
AATATGTGTAGCTTGACGGTCGTTGTCCCATGTGGCCCTGGCCTGGCGGCGTTTTTCCAC
TCCATCAGCCCTGTTCTAGGAGGCTGTCCACAGGGAAACACTATTATGCATTCTCAGCAA
CTGCTCAATCTATGCAAGCCTTCCCTGTGTGCCCAAGGGCGCCCCCTCAGGCTCTCTGAA
AAACTGCTGCGGGTCCTGTTTTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               287-443, + strand, RNAz p=0.976199
               

               
               952-1071, - strand, RNAz p=0.739281

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               287-443, + strand, RNAz p=0.976199
               

               
               952-1071, - strand, RNAz p=0.739281

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               304-400, + strand, RNAmicro p=0.966575

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               304-400, + strand, RNAmicro p=0.966575

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               18-794, gnl|bosTau2|chr3 (75287137-75287915)
               

               
               18-794, gnl|Hg17|chr1 (37947014-37946251)
               

               
               18-794, gnl|Mm7|chr4 (124291563-124292248)
               


               
               795-1101, gnl|bosTau2|chr3 (75287890-75288191)
               

               
               795-1101, gnl|canFam2|chr15 (7725768-7725082)
               

               
               795-1101, gnl|dasNov1|scaffold_20843 (18324-18973)
               

               
               795-1101, gnl|echTel1|scaffold_320258 (47986-47338)
               

               
               795-1101, gnl|galGal2|chr23 (3121371-3120741)
               

               
               795-1101, gnl|hg17|chr1 (37945715-37946352)
               

               
               795-1101, gnl|Hg17|chr1 (37946272-37945974)
               

               
               795-1101, gnl|loxAfr1|scaffold_7945 (52723-53342)
               

               
               795-1101, gnl|mm7|chr4 (124292764-124292151)
               

               
               795-1101, gnl|Mm7|chr4 (124292225-124292510)
               

               
               795-1101, gnl|monDom2|scaffold_43 (11685025-11684370)
               

               
               795-1101, gnl|oryCun1|scaffold_214111 (66752-66102)
               

               
               795-1101, gnl|panTro1|chr1 (38787781-38788418)
               

               
               795-1101, gnl|rheMac2|chr1 (40680125-40680757)
               

               
               795-1101, gnl|rn3|chr5 (144190908-144190274)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-794, gnl|bosTau2|chr3 (75287137-75287915)
               

               
               18-794, gnl|Hg17|chr1 (37947014-37946251)
               

               
               18-794, gnl|Mm7|chr4 (124291563-124292248)
               


               
               795-1101, gnl|bosTau2|chr3 (75287890-75288191)
               

               
               795-1101, gnl|canFam2|chr15 (7725768-7725082)
               

               
               795-1101, gnl|dasNov1|scaffold_20843 (18324-18973)
               

               
               795-1101, gnl|echTel1|scaffold_320258 (47986-47338)
               

               
               795-1101, gnl|galGal2|chr23 (3121371-3120741)
               

               
               795-1101, gnl|hg17|chr1 (37945715-37946352)
               

               
               795-1101, gnl|Hg17|chr1 (37946272-37945974)
               

               
               795-1101, gnl|loxAfr1|scaffold_7945 (52723-53342)
               

               
               795-1101, gnl|mm7|chr4 (124292764-124292151)
               

               
               795-1101, gnl|Mm7|chr4 (124292225-124292510)
               

               
               795-1101, gnl|monDom2|scaffold_43 (11685025-11684370)
               

               
               795-1101, gnl|oryCun1|scaffold_214111 (66752-66102)
               

               
               795-1101, gnl|panTro1|chr1 (38787781-38788418)
               

               
               795-1101, gnl|rheMac2|chr1 (40680125-40680757)
               

               
               795-1101, gnl|rn3|chr5 (144190908-144190274)

	287-443, + strand, RNAz p=0.976199
	952-1071, - strand, RNAz p=0.739281

	18-794, gnl\|bosTau2\|chr3 (75287137-75287915)
	18-794, gnl\|Hg17\|chr1 (37947014-37946251)
	18-794, gnl\|Mm7\|chr4 (124291563-124292248)

	795-1101, gnl\|bosTau2\|chr3 (75287890-75288191)
	795-1101, gnl\|canFam2\|chr15 (7725768-7725082)
	795-1101, gnl\|dasNov1\|scaffold_20843 (18324-18973)
	795-1101, gnl\|echTel1\|scaffold_320258 (47986-47338)
	795-1101, gnl\|galGal2\|chr23 (3121371-3120741)
	795-1101, gnl\|hg17\|chr1 (37945715-37946352)
	795-1101, gnl\|Hg17\|chr1 (37946272-37945974)
	795-1101, gnl\|loxAfr1\|scaffold_7945 (52723-53342)
	795-1101, gnl\|mm7\|chr4 (124292764-124292151)
	795-1101, gnl\|Mm7\|chr4 (124292225-124292510)
	795-1101, gnl\|monDom2\|scaffold_43 (11685025-11684370)
	795-1101, gnl\|oryCun1\|scaffold_214111 (66752-66102)
	795-1101, gnl\|panTro1\|chr1 (38787781-38788418)
	795-1101, gnl\|rheMac2\|chr1 (40680125-40680757)
	795-1101, gnl\|rn3\|chr5 (144190908-144190274)