Ss1.1-Pig4-TMW8041E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGCTCCGGGCGCGGCGCCTGCACCATGAACTAC------------------------ ------------GAGATCCAGCGCTTCGAGTCGGTCCACCCCAACATCTACTCCATCTAC GAGCTGCTGGAGCGCGTGGAGGAGCCGGTGTTGCAGAACCAGATCCGGGAGCACGTCATC GCCATCGAAGACGCCTTTGTGAACAGCCAGGAATGGACGTTAAGTCGATCCGTCCCGGAG CTCAAAGTGGGGATTGTGGGTAACTTGGCCAGCGGCAAGTCGGCCCTGGTGCACCGGTAC CTGACCGGCACATACGTCCAGGAAGAATCGCCCGAAGATATGGATGCAGGTGGCAGATTC AAGAAGGAGATCGTTGTGGACGGCCAGAGCTACCTGCTGCTGATCAGAGATGAAGGGGGC CCCCCAGAGGCACAGTTTGCCATGTGGGTGGACGCTGTCATATTTGTCTTCAGCTTGGAG GACGAGATAAGCTTCCAGACCGTCTACCACTACTACAGCCGGATGGCCAACTACCGCAGC ACGAGCGAGATCCCTCTGGTCCTCGTGGGGACCCAGGATGCCATAAGCTCCACCAACCCG CGGGTCATCGACGACGCCAGGGCGCGGAAGCTCTCCAGCGACCTGAAGAGGTGCACGTAC TACGAGACGTGCGCCACCTACGGGCTGAACGTGGAGAGGGTCTTCCAGGACGTTGCCCAG AAGATTGTTGCCACAAGGAAGAAGCAGCAGCTGTCCATAGGACCTTGCAAGTCGCTCCCC AACTCCCCAAGCCACTCGTCCGTCTGTTCCGCACAGGTGTCTGCCGTACACATCAGCCAG ACAAGCAATGGCGGTGGGAGCCTGAGCGACTATTCCTCCTCCGTCCCGTCCACGCCGAGC ACCAGCCAGAAGGAGCTGCGCATCGACGTCCCGCCCACGGCCAACACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGCTCCGGGCGCGGCGCCTGCACCATGAACTAC------------------------ ------------GAGATCCAGCGCTTCGAGTCGGTCCACCCCAACATCTACTCCATCTAC GAGCTGCTGGAGCGCGTGGAGGAGCCGGTGTTGCAGAACCAGATCCGGGAGCACGTCATC GCCATCGAAGACGCCTTTGTGAACAGCCAGGAATGGACGTTAAGTCGATCCGTCCCGGAG CTCAAAGTGGGGATTGTGGGTAACTTGGCCAGCGGCAAGTCGGCCCTGGTGCACCGGTAC CTGACCGGCACATACGTCCAGGAAGAATCGCCCGAAGATATGGATGCAGGTGGCAGATTC AAGAAGGAGATCGTTGTGGACGGCCAGAGCTACCTGCTGCTGATCAGAGATGAAGGGGGC CCCCCAGAGGCACAGTTTGCCATGTGGGTGGACGCTGTCATATTTGTCTTCAGCTTGGAG GACGAGATAAGCTTCCAGACCGTCTACCACTACTACAGCCGGATGGCCAACTACCGCAGC ACGAGCGAGATCCCTCTGGTCCTCGTGGGGACCCAGGATGCCATAAGCTCCACCAACCCG CGGGTCATCGACGACGCCAGGGCGCGGAAGCTCTCCAGCGACCTGAAGAGGTGCACGTAC TACGAGACGTGCGCCACCTACGGGCTGAACGTGGAGAGGGTCTTCCAGGACGTTGCCCAG AAGATTGTTGCCACAAGGAAGAAGCAGCAGCTGTCCATAGGACCTTGCAAGTCGCTCCCC AACTCCCCAAGCCACTCGTCCGTCTGTTCCGCACAGGTGTCTGCCGTACACATCAGCCAG ACAAGCAATGGCGGTGGGAGCCTGAGCGACTATTCCTCCTCCGTCCCGTCCACGCCGAGC ACCAGCCAGAAGGAGCTGCGCATCGACGTCCCGCCCACGGCCAACACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 581-676, - strand, RNAz p=0.612875 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 581-676, - strand, RNAz p=0.612875 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 36-154, gnl|bosTau2|chr3 (81603535-81603653) | |
| 36-154, gnl|canFam2|chr16 (18085513-18085623) | |
| 36-154, gnl|danRer3|chr15 (29963817-29963927) | |
| 36-154, gnl|dasNov1|scaffold_53451 (9219-9109) | |
| 36-154, gnl|echTel1|scaffold_226619 (5307-5200) | |
| 36-154, gnl|fr1|chrUn (61476306-61476416) | |
| 36-154, gnl|hg17|chr1 (176287539-176287650) | |
| 36-154, gnl|Hg17|chr2 (236185375-236185493) | |
| 36-154, gnl|loxAfr1|scaffold_43711 (9832-9722) | |
| 36-154, gnl|Mm7|chr1 (89360251-89360369) | |
| 36-154, gnl|mm7|chr14 (68589758-68589674) | |
| 36-154, gnl|monDom2|scaffold_7 (11243046-11243156) | |
| 36-154, gnl|oryCun1|scaffold_185556 (8161-8051) | |
| 36-154, gnl|panTro1|chr1 (158682069-158682179) | |
| 36-154, gnl|rheMac2|chr1 (191146207-191146097) | |
| 36-154, gnl|rn3|chr5 (45323727-45323820) | |
| 36-154, gnl|tetNig1|chr3 (1318942-1318832) | |
| 36-154, gnl|xenTro1|scaffold_49 (1665054-1665164) | |
| 541-676, gnl|bosTau2|chr3 (81873382-81873517) | |
| 541-676, gnl|canFam2|chr25 (49685426-49685593) | |
| 541-676, gnl|danRer3|chr6 (11365859-11365716) | |
| 541-676, gnl|dasNov1|scaffold_327 (182369-182248) | |
| 541-676, gnl|echTel1|scaffold_319337 (52881-52756) | |
| 541-676, gnl|fr1|chrUn (61516775-61516936) | |
| 541-676, gnl|galGal2|chr7 (5293340-5293178) | |
| 541-676, gnl|hg17|chr2 (236440977-236441152) | |
| 541-676, gnl|Hg17|chr2 (236440997-236441132) | |
| 541-676, gnl|loxAfr1|scaffold_140723 (501-678) | |
| 541-676, gnl|mm7|chr1 (89538928-89539082) | |
| 541-676, gnl|Mm7|chr1 (89538936-89539071) | |
| 541-676, gnl|monDom2|scaffold_120 (3258492-3258658) | |
| 541-676, gnl|panTro1|chr13 (127296396-127296571) | |
| 541-676, gnl|rheMac2|chr12 (99615220-99615396) | |
| 541-676, gnl|rn3|chr9 (88944644-88944806) | |
| 541-676, gnl|tetNig1|chr3 (1287373-1287216) | |
| 541-676, gnl|xenTro1|scaffold_49 (1807226-1807387) | |
| 802-912, gnl|bosTau2|chr3 (81924252-81924362) | |
| 802-912, gnl|canFam2|chr16 (18116692-18116780) | |
| 802-912, gnl|canFam2|chr25 (49729442-49729631) | |
| 802-912, gnl|danRer3|chr6 (11338189-11338020) | |
| 802-912, gnl|danRer3|chr6 (11338183-11338093) | |
| 802-912, gnl|dasNov1|scaffold_247726 (484-313) | |
| 802-912, gnl|dasNov1|scaffold_327 (182138-182035) | |
| 802-912, gnl|echTel1|scaffold_319337 (51643-51563) | |
| 802-912, gnl|fr1|chrUn (192880928-192880742) | |
| 802-912, gnl|fr1|chrUn (192880916-192880824) | |
| 802-912, gnl|galGal2|chr7 (5266425-5266239) | |
| 802-912, gnl|galGal2|chr7 (5266412-5266321) | |
| 802-912, gnl|hg17|chr2 (236489996-236490185) | |
| 802-912, gnl|Hg17|chr2 (236490008-236490118) | |
| 802-912, gnl|hg17|chr9 (73493358-73493474) | |
| 802-912, gnl|loxAfr1|scaffold_97327 (181-92) | |
| 802-912, gnl|mm7|chr1 (89569796-89569985) | |
| 802-912, gnl|mm7|chr1 (89569809-89569900) | |
| 802-912, gnl|Mm7|chr1 (89569808-89569918) | |
| 802-912, gnl|monDom2|scaffold_120 (3298678-3298867) | |
| 802-912, gnl|monDom2|scaffold_120 (3298691-3298782) | |
| 802-912, gnl|oryCun1|scaffold_177806 (46842-47030) | |
| 802-912, gnl|oryCun1|scaffold_177806 (46854-46946) | |
| 802-912, gnl|panTro1|chr11 (57321407-57321523) | |
| 802-912, gnl|panTro1|chr13 (127346047-127346236) | |
| 802-912, gnl|rheMac2|chr12 (99663149-99663338) | |
| 802-912, gnl|rheMac2|chr15 (82435810-82435926) | |
| 802-912, gnl|rn3|chr9 (88975835-88976024) | |
| 802-912, gnl|rn3|chr9 (88975848-88975939) | |
| 802-912, gnl|tetNig1|chr3 (1284184-1284009) | |
| 802-912, gnl|tetNig1|chr3 (1284189-1284091) | |
| 802-912, gnl|xenTro1|scaffold_49 (1819341-1819515) | |
| 802-912, gnl|xenTro1|scaffold_49 (1819316-1819435) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-154, gnl|bosTau2|chr3 (81603535-81603653) | |
| 36-154, gnl|canFam2|chr16 (18085513-18085623) | |
| 36-154, gnl|danRer3|chr15 (29963817-29963927) | |
| 36-154, gnl|dasNov1|scaffold_53451 (9219-9109) | |
| 36-154, gnl|echTel1|scaffold_226619 (5307-5200) | |
| 36-154, gnl|fr1|chrUn (61476306-61476416) | |
| 36-154, gnl|hg17|chr1 (176287539-176287650) | |
| 36-154, gnl|Hg17|chr2 (236185375-236185493) | |
| 36-154, gnl|loxAfr1|scaffold_43711 (9832-9722) | |
| 36-154, gnl|Mm7|chr1 (89360251-89360369) | |
| 36-154, gnl|mm7|chr14 (68589758-68589674) | |
| 36-154, gnl|monDom2|scaffold_7 (11243046-11243156) | |
| 36-154, gnl|oryCun1|scaffold_185556 (8161-8051) | |
| 36-154, gnl|panTro1|chr1 (158682069-158682179) | |
| 36-154, gnl|rheMac2|chr1 (191146207-191146097) | |
| 36-154, gnl|rn3|chr5 (45323727-45323820) | |
| 36-154, gnl|tetNig1|chr3 (1318942-1318832) | |
| 36-154, gnl|xenTro1|scaffold_49 (1665054-1665164) | |
| 541-676, gnl|bosTau2|chr3 (81873382-81873517) | |
| 541-676, gnl|canFam2|chr25 (49685426-49685593) | |
| 541-676, gnl|danRer3|chr6 (11365859-11365716) | |
| 541-676, gnl|dasNov1|scaffold_327 (182369-182248) | |
| 541-676, gnl|echTel1|scaffold_319337 (52881-52756) | |
| 541-676, gnl|fr1|chrUn (61516775-61516936) | |
| 541-676, gnl|galGal2|chr7 (5293340-5293178) | |
| 541-676, gnl|hg17|chr2 (236440977-236441152) | |
| 541-676, gnl|Hg17|chr2 (236440997-236441132) | |
| 541-676, gnl|loxAfr1|scaffold_140723 (501-678) | |
| 541-676, gnl|mm7|chr1 (89538928-89539082) | |
| 541-676, gnl|Mm7|chr1 (89538936-89539071) | |
| 541-676, gnl|monDom2|scaffold_120 (3258492-3258658) | |
| 541-676, gnl|panTro1|chr13 (127296396-127296571) | |
| 541-676, gnl|rheMac2|chr12 (99615220-99615396) | |
| 541-676, gnl|rn3|chr9 (88944644-88944806) | |
| 541-676, gnl|tetNig1|chr3 (1287373-1287216) | |
| 541-676, gnl|xenTro1|scaffold_49 (1807226-1807387) | |
| 802-912, gnl|bosTau2|chr3 (81924252-81924362) | |
| 802-912, gnl|canFam2|chr16 (18116692-18116780) | |
| 802-912, gnl|canFam2|chr25 (49729442-49729631) | |
| 802-912, gnl|danRer3|chr6 (11338189-11338020) | |
| 802-912, gnl|danRer3|chr6 (11338183-11338093) | |
| 802-912, gnl|dasNov1|scaffold_247726 (484-313) | |
| 802-912, gnl|dasNov1|scaffold_327 (182138-182035) | |
| 802-912, gnl|echTel1|scaffold_319337 (51643-51563) | |
| 802-912, gnl|fr1|chrUn (192880928-192880742) | |
| 802-912, gnl|fr1|chrUn (192880916-192880824) | |
| 802-912, gnl|galGal2|chr7 (5266425-5266239) | |
| 802-912, gnl|galGal2|chr7 (5266412-5266321) | |
| 802-912, gnl|hg17|chr2 (236489996-236490185) | |
| 802-912, gnl|Hg17|chr2 (236490008-236490118) | |
| 802-912, gnl|hg17|chr9 (73493358-73493474) | |
| 802-912, gnl|loxAfr1|scaffold_97327 (181-92) | |
| 802-912, gnl|mm7|chr1 (89569796-89569985) | |
| 802-912, gnl|mm7|chr1 (89569809-89569900) | |
| 802-912, gnl|Mm7|chr1 (89569808-89569918) | |
| 802-912, gnl|monDom2|scaffold_120 (3298678-3298867) | |
| 802-912, gnl|monDom2|scaffold_120 (3298691-3298782) | |
| 802-912, gnl|oryCun1|scaffold_177806 (46842-47030) | |
| 802-912, gnl|oryCun1|scaffold_177806 (46854-46946) | |
| 802-912, gnl|panTro1|chr11 (57321407-57321523) | |
| 802-912, gnl|panTro1|chr13 (127346047-127346236) | |
| 802-912, gnl|rheMac2|chr12 (99663149-99663338) | |
| 802-912, gnl|rheMac2|chr15 (82435810-82435926) | |
| 802-912, gnl|rn3|chr9 (88975835-88976024) | |
| 802-912, gnl|rn3|chr9 (88975848-88975939) | |
| 802-912, gnl|tetNig1|chr3 (1284184-1284009) | |
| 802-912, gnl|tetNig1|chr3 (1284189-1284091) | |
| 802-912, gnl|xenTro1|scaffold_49 (1819341-1819515) | |
| 802-912, gnl|xenTro1|scaffold_49 (1819316-1819435) |