Non-Coding RNA Search

Ss1.1-Pig4-TMW8041E08.3

Sequence:


               
               AATTCTGGAATTATGTCATTTAAGAATGGCTATTCACCAAAGTGGGAGAGAAGTGCTGAT
GATTTCAGAGCAACAAAGCAAGGAGAGTTGAGAGGTGGTTTGATTTTGAGGGATTTATAA
AGCTTTATATTTTGGGTAGCAGAAGTAGGTTTGGATAGAAATGTTTGTTTTCTCAACATA
TTCATGAATTTATTTGAGAAGCAATGCTAATAAGTATGAATAACCTGTGCAGTTCTGGAT
TTTTTTTTTACTTTTTTGGAGGTAATACCTTCATATGGTAATTTCAAGGTTTTTCGTGAA
CAGATATCATGACACTTAACCATAAGCCAAATTCTCTGGATATTAAGTGTCATCCCTAAC
ATCCAGTCTTAATATTATTTAGTGTTTATGTGACATTTGTATTAGCAACTTAGAAGGAAT
TTTGTATCTAGTAGTTTATGGGGTATGTTATGTTAATTAGTGCTGACTTTTTGAAAGCTT
TTCTAATTTGGTGACTTCTGAAACGATAGGTAGAGCACTGTAAACATGGCTTTATTAGTT
TCCATTGCCCTTACATGAGTTTGTCACTCTGTACAATTAGGTGCCTCTTACATGAATGAT
GTGATAATTTCAGGAGTTGAAGGGGAAAATTGCATGTTAAAGACTACTTTAGACAATACG
GTATCTTTATTTCCTTCTCCCATACTACTTTACAACTAGAGCCACTTTTTAAAAAATAAC
ATTCCTTGGAAATGGCACATTCTTTGAATCCATTCTTTGGATCCTATTCTTTTTTTACAG
TAACTCATGTATCAGTGCCTTTATAAGAAATTAAAACTATTTTCGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTGGAATTATGTCATTTAAGAATGGCTATTCACCAAAGTGGGAGAGAAGTGCTGAT
GATTTCAGAGCAACAAAGCAAGGAGAGTTGAGAGGTGGTTTGATTTTGAGGGATTTATAA
AGCTTTATATTTTGGGTAGCAGAAGTAGGTTTGGATAGAAATGTTTGTTTTCTCAACATA
TTCATGAATTTATTTGAGAAGCAATGCTAATAAGTATGAATAACCTGTGCAGTTCTGGAT
TTTTTTTTTACTTTTTTGGAGGTAATACCTTCATATGGTAATTTCAAGGTTTTTCGTGAA
CAGATATCATGACACTTAACCATAAGCCAAATTCTCTGGATATTAAGTGTCATCCCTAAC
ATCCAGTCTTAATATTATTTAGTGTTTATGTGACATTTGTATTAGCAACTTAGAAGGAAT
TTTGTATCTAGTAGTTTATGGGGTATGTTATGTTAATTAGTGCTGACTTTTTGAAAGCTT
TTCTAATTTGGTGACTTCTGAAACGATAGGTAGAGCACTGTAAACATGGCTTTATTAGTT
TCCATTGCCCTTACATGAGTTTGTCACTCTGTACAATTAGGTGCCTCTTACATGAATGAT
GTGATAATTTCAGGAGTTGAAGGGGAAAATTGCATGTTAAAGACTACTTTAGACAATACG
GTATCTTTATTTCCTTCTCCCATACTACTTTACAACTAGAGCCACTTTTTAAAAAATAAC
ATTCCTTGGAAATGGCACATTCTTTGAATCCATTCTTTGGATCCTATTCTTTTTTTACAG
TAACTCATGTATCAGTGCCTTTATAAGAAATTAAAACTATTTTCGGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               289-403, - strand, RNAz p=0.97281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               289-403, - strand, RNAz p=0.97281

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-759, gnl|bosTau2|chr22 (7424525-7423827)
               

               
               14-759, gnl|Hg17|chr3 (42641958-42642726)
               

               
               14-759, gnl|Mm7|chr9 (121438858-121439606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-759, gnl|bosTau2|chr22 (7424525-7423827)
               

               
               14-759, gnl|Hg17|chr3 (42641958-42642726)
               

               
               14-759, gnl|Mm7|chr9 (121438858-121439606)

	14-759, gnl\|bosTau2\|chr22 (7424525-7423827)
	14-759, gnl\|Hg17\|chr3 (42641958-42642726)
	14-759, gnl\|Mm7\|chr9 (121438858-121439606)