Non-Coding RNA Search

Ss1.1-Pig4-TMW8041E24.5

Sequence:


               
               GTCCTTAGGATCATCTAATGTTTTATCCTACTATATGGAGAGTGAATATAATTCAAATAC
AACTTAATTTCAACAAATATTTATTAATATATACAATTTTTCAGATACTAGGTGCTGAGG
ATGCAGCAGTTAAACAATGATAACAACCCATCAACAGCAGTCAGAAATCCTGTGTACATG
GAACTTACATTCTGGTGGGGGTTGGGGAACAGATAATAAATAAGATAAATAGGTAAAATA
TATAATAATATGTGATAATATATTGGTTGGTGATAAGTGCTTTGAAGAAAGATAAATGCA
GTGTTATAATTATTTCCTTAATAGTATGTTTCAGATTCTGAAACCCTGGTCATCAGGTAG
ATAGTAGGTTTTTAACAATTGTTGGGTTGACTATGGCATTTATCATTTGCTCAGTAGTTA
TGTTGGGGACACAAGTGTTAATAGCCCCCGAGTTCGGAACTTGGCTTTGGTAATTAATTA
GCTCATTGCTGCTGGTTTTTTGGAAGGTAGCATTGTGGAATAGAGTGGAGCTTGTGCTGT
ATATTGGTGAGAGGTTGCTAGAAGTGTTACGTGGATGCACATAAGCCTAATAATCTGACT
GTTTCAACTCATGAAAATGTTGTCATTTTCTTTAGAATATGTGAAGTTTAAGAGCCTATT
TTGTTTTAGCTACTAGTTTTTTTTTTCACTAGAACATCTTTGCTTTCTATTTCAAACTGT
TTTACCTTAGCATGTAGTTGTTACTTCTGAAAGCAATGGCCCTACATTTTTATTCTAGTT
GACAGATGTTATTTAAACCTCCACAGCTAGTATTTATTTTGAACATATTTGGTATAGTCA
TATTGGAGTCAACCTTCTTCTTAGCCTTTAATTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTTAGGATCATCTAATGTTTTATCCTACTATATGGAGAGTGAATATAATTCAAATAC
AACTTAATTTCAACAAATATTTATTAATATATACAATTTTTCAGATACTAGGTGCTGAGG
ATGCAGCAGTTAAACAATGATAACAACCCATCAACAGCAGTCAGAAATCCTGTGTACATG
GAACTTACATTCTGGTGGGGGTTGGGGAACAGATAATAAATAAGATAAATAGGTAAAATA
TATAATAATATGTGATAATATATTGGTTGGTGATAAGTGCTTTGAAGAAAGATAAATGCA
GTGTTATAATTATTTCCTTAATAGTATGTTTCAGATTCTGAAACCCTGGTCATCAGGTAG
ATAGTAGGTTTTTAACAATTGTTGGGTTGACTATGGCATTTATCATTTGCTCAGTAGTTA
TGTTGGGGACACAAGTGTTAATAGCCCCCGAGTTCGGAACTTGGCTTTGGTAATTAATTA
GCTCATTGCTGCTGGTTTTTTGGAAGGTAGCATTGTGGAATAGAGTGGAGCTTGTGCTGT
ATATTGGTGAGAGGTTGCTAGAAGTGTTACGTGGATGCACATAAGCCTAATAATCTGACT
GTTTCAACTCATGAAAATGTTGTCATTTTCTTTAGAATATGTGAAGTTTAAGAGCCTATT
TTGTTTTAGCTACTAGTTTTTTTTTTCACTAGAACATCTTTGCTTTCTATTTCAAACTGT
TTTACCTTAGCATGTAGTTGTTACTTCTGAAAGCAATGGCCCTACATTTTTATTCTAGTT
GACAGATGTTATTTAAACCTCCACAGCTAGTATTTATTTTGAACATATTTGGTATAGTCA
TATTGGAGTCAACCTTCTTCTTAGCCTTTAATTTCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               677-780, - strand, RNAz p=0.930611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               677-780, - strand, RNAz p=0.930611

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-254, gnl|bosTau2|chr7 (59445501-59445255)
               

               
               3-254, gnl|Hg17|chr5 (94909149-94908914)
               

               
               3-254, gnl|Mm7|chr13 (73119288-73119518)
               


               
               421-875, gnl|bosTau2|chr7 (59442466-59442022)
               

               
               421-875, gnl|Hg17|chr5 (94906122-94905229)
               

               
               421-875, gnl|Mm7|chr13 (73122505-73122941)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-254, gnl|bosTau2|chr7 (59445501-59445255)
               

               
               3-254, gnl|Hg17|chr5 (94909149-94908914)
               

               
               3-254, gnl|Mm7|chr13 (73119288-73119518)
               


               
               421-875, gnl|bosTau2|chr7 (59442466-59442022)
               

               
               421-875, gnl|Hg17|chr5 (94906122-94905229)
               

               
               421-875, gnl|Mm7|chr13 (73122505-73122941)

	3-254, gnl\|bosTau2\|chr7 (59445501-59445255)
	3-254, gnl\|Hg17\|chr5 (94909149-94908914)
	3-254, gnl\|Mm7\|chr13 (73119288-73119518)

	421-875, gnl\|bosTau2\|chr7 (59442466-59442022)
	421-875, gnl\|Hg17\|chr5 (94906122-94905229)
	421-875, gnl\|Mm7\|chr13 (73122505-73122941)