Non-Coding RNA Search

Ss1.1-Pig4-TMW8041G17.5

Sequence:


               
               GTTCACCCCCGTTGTAAACAGTGTAGAAGGAAGAACACCATCAGAGAGGGGCCCGGAGCT
CAGACGCTCCCCACCCATCGACTCACTGGACTGGGGAGTGTCGGCTCTTTCTATAGTTAT
TTTCGGCAGAAAGTACTGCTTAAACATTAAGTGATAGATTTCTCTGAGTTTGAGAATGGT
AAAATGAGTGCTCCTCCAACTTAATCTCCCTAAAGAATCACCTGAAAAGATTGTTAAAGG
AGCTCCCTAGTGGCTTAGTGGGTTAAGGACCCAGCATTGTCACTGCTGTGGCGTGGGTTC
AACCCCTAGCCCAAGAATTTCCATGCGCTACAGGCACAGACAAAAAAAAAAAAAAAATCA
TTAAAAACGTGCAGGCCCCGCCCCTAGATTTTCTTTTCCAGTGGGCCTGGGCAGTGGGCT
GGGAATATGCATTATCAGCAGGGCTCCTAGGAGATCTGAAAAGTACTGGGTAAGACTAAC
CCATAACCTACCCCCATCACGTTGGACATCTTTGGAAGTCCTGAGATGTGTAACAAGGCT
GGCCACCCCGATGGCAGGATGTGAATGACAGTGAGGGTGCTCGGCCCAAACAAGGGTCCT
GTCCCACTCCAGGCATCCCTACTTCCCAGAAGGCATTGCGGCACCTCTTGAGCACATGGA
AGCTGCAGCGAACACACCAACTCTCCCAGGCTAGAAGCTCAGTGTGAACCCTGGGAAGGC
TGTCCTGGGTTCAGGGTGACACCTGACAGAAGCAGGACAGCAGCTCCCAAGAGCCAGATG
AGAGTGGGAGAGAGACTGGAGATCTGAGCACGAGCGGTGCTTCCCAAACGTGGCGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCACCCCCGTTGTAAACAGTGTAGAAGGAAGAACACCATCAGAGAGGGGCCCGGAGCT
CAGACGCTCCCCACCCATCGACTCACTGGACTGGGGAGTGTCGGCTCTTTCTATAGTTAT
TTTCGGCAGAAAGTACTGCTTAAACATTAAGTGATAGATTTCTCTGAGTTTGAGAATGGT
AAAATGAGTGCTCCTCCAACTTAATCTCCCTAAAGAATCACCTGAAAAGATTGTTAAAGG
AGCTCCCTAGTGGCTTAGTGGGTTAAGGACCCAGCATTGTCACTGCTGTGGCGTGGGTTC
AACCCCTAGCCCAAGAATTTCCATGCGCTACAGGCACAGACAAAAAAAAAAAAAAAATCA
TTAAAAACGTGCAGGCCCCGCCCCTAGATTTTCTTTTCCAGTGGGCCTGGGCAGTGGGCT
GGGAATATGCATTATCAGCAGGGCTCCTAGGAGATCTGAAAAGTACTGGGTAAGACTAAC
CCATAACCTACCCCCATCACGTTGGACATCTTTGGAAGTCCTGAGATGTGTAACAAGGCT
GGCCACCCCGATGGCAGGATGTGAATGACAGTGAGGGTGCTCGGCCCAAACAAGGGTCCT
GTCCCACTCCAGGCATCCCTACTTCCCAGAAGGCATTGCGGCACCTCTTGAGCACATGGA
AGCTGCAGCGAACACACCAACTCTCCCAGGCTAGAAGCTCAGTGTGAACCCTGGGAAGGC
TGTCCTGGGTTCAGGGTGACACCTGACAGAAGCAGGACAGCAGCTCCCAAGAGCCAGATG
AGAGTGGGAGAGAGACTGGAGATCTGAGCACGAGCGGTGCTTCCCAAACGTGGCGCAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               449-560, - strand, RNAz p=0.620008
               

               
               682-801, - strand, RNAz p=0.846122

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-560, - strand, RNAz p=0.620008
               

               
               682-801, - strand, RNAz p=0.846122

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               103-238, gnl|bosTau2|chr11 (78526156-78526019)
               


               
               351-826, gnl|bosTau2|chr11 (78526033-78525588)
               

               
               351-826, gnl|canFam2|chr9 (58215382-58214908)
               

               
               351-826, gnl|echTel1|scaffold_158591 (7961-7380)
               

               
               351-826, gnl|hg17|chr9 (128573586-128574034)
               

               
               351-826, gnl|Hg17|chr9 (128574207-128573740)
               

               
               351-826, gnl|loxAfr1|scaffold_60837 (6988-7506)
               

               
               351-826, gnl|mm7|chr2 (30106421-30106699)
               

               
               351-826, gnl|panTro1|chr11 (113412394-113412842)
               

               
               351-826, gnl|rheMac2|chr15 (10129631-10129183)
               

               
               351-826, gnl|rn3|chr3 (9104569-9104859)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-238, gnl|bosTau2|chr11 (78526156-78526019)
               


               
               351-826, gnl|bosTau2|chr11 (78526033-78525588)
               

               
               351-826, gnl|canFam2|chr9 (58215382-58214908)
               

               
               351-826, gnl|echTel1|scaffold_158591 (7961-7380)
               

               
               351-826, gnl|hg17|chr9 (128573586-128574034)
               

               
               351-826, gnl|Hg17|chr9 (128574207-128573740)
               

               
               351-826, gnl|loxAfr1|scaffold_60837 (6988-7506)
               

               
               351-826, gnl|mm7|chr2 (30106421-30106699)
               

               
               351-826, gnl|panTro1|chr11 (113412394-113412842)
               

               
               351-826, gnl|rheMac2|chr15 (10129631-10129183)
               

               
               351-826, gnl|rn3|chr3 (9104569-9104859)

	449-560, - strand, RNAz p=0.620008
	682-801, - strand, RNAz p=0.846122

	103-238, gnl\|bosTau2\|chr11 (78526156-78526019)

	351-826, gnl\|bosTau2\|chr11 (78526033-78525588)
	351-826, gnl\|canFam2\|chr9 (58215382-58214908)
	351-826, gnl\|echTel1\|scaffold_158591 (7961-7380)
	351-826, gnl\|hg17\|chr9 (128573586-128574034)
	351-826, gnl\|Hg17\|chr9 (128574207-128573740)
	351-826, gnl\|loxAfr1\|scaffold_60837 (6988-7506)
	351-826, gnl\|mm7\|chr2 (30106421-30106699)
	351-826, gnl\|panTro1\|chr11 (113412394-113412842)
	351-826, gnl\|rheMac2\|chr15 (10129631-10129183)
	351-826, gnl\|rn3\|chr3 (9104569-9104859)