Ss1.1-Pig4-TMW8041K22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGGTCACGGCAGCGGACCTGGAGTTTCGCTTCACTCTGAACGTGACTCTCCCTCACCA CCTGCTGCCTCTGTGTGCGGACGTCGTCCCGGGACCCAGCTGGGAGGAGTCGTTTTGGAA GCTCACAGTCTTCTTTGTCAGTTTGTCCCTGTTGGGTGTGGTTTTAATAGCCTTCCAACA AGCCCAGTACATCCTGATGGAATTCATGAAAACGAGACAGAGGCAAAACGCAAGCTCTTC TTCCCAGCAGAACACCAGTCCCATGGATGCCATCAGCTCCCATTCTCACAAAGGCAACTG CAAGAACTTTCTCGAGCCTTACGGCCCCTCTGATAAAGGCAGAGGGAAAAGCTGCCTTCC CGTGAACTCCCCACAGAGCAGGATCCAGAACGCCACCAAGAGGAGCCCGGCCACCTACGG CCACTCGCAGAAGAAGCACAAGTGCTCAGTCTATTACAGCAAACACAAAGCCAGCACGGC CATCACCAGCAGTGCCACCACGGCCACTGAGGAAAAGCAGGTGGGGCCCCCGAGCAGCCC CCCGTGTGGCGCTCGAGAGGACACGTGCACCGACGTGGTGGCCGAGAACTGGATCCCCCT CAAGTATGCGAGTGGCCTAAACAACCTGCAGAAGAACTTAACCCCTCCCAAACCCCTCAC GGATAAAGAGGAGAACACGCTGAAAAGCGCAGTCGTTGTCCCCAGCGCTCCTTCCGAGTG TCCCGCGAAGGAGGGAGCGCAGACTTGTATGTTTCCTAAGGAAACGAACGTGCACATCTC AGAAAACACAGCCGAGCTCAAGGAGCGCGAGCTCTGTCCCCTGAAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGGTCACGGCAGCGGACCTGGAGTTTCGCTTCACTCTGAACGTGACTCTCCCTCACCA CCTGCTGCCTCTGTGTGCGGACGTCGTCCCGGGACCCAGCTGGGAGGAGTCGTTTTGGAA GCTCACAGTCTTCTTTGTCAGTTTGTCCCTGTTGGGTGTGGTTTTAATAGCCTTCCAACA AGCCCAGTACATCCTGATGGAATTCATGAAAACGAGACAGAGGCAAAACGCAAGCTCTTC TTCCCAGCAGAACACCAGTCCCATGGATGCCATCAGCTCCCATTCTCACAAAGGCAACTG CAAGAACTTTCTCGAGCCTTACGGCCCCTCTGATAAAGGCAGAGGGAAAAGCTGCCTTCC CGTGAACTCCCCACAGAGCAGGATCCAGAACGCCACCAAGAGGAGCCCGGCCACCTACGG CCACTCGCAGAAGAAGCACAAGTGCTCAGTCTATTACAGCAAACACAAAGCCAGCACGGC CATCACCAGCAGTGCCACCACGGCCACTGAGGAAAAGCAGGTGGGGCCCCCGAGCAGCCC CCCGTGTGGCGCTCGAGAGGACACGTGCACCGACGTGGTGGCCGAGAACTGGATCCCCCT CAAGTATGCGAGTGGCCTAAACAACCTGCAGAAGAACTTAACCCCTCCCAAACCCCTCAC GGATAAAGAGGAGAACACGCTGAAAAGCGCAGTCGTTGTCCCCAGCGCTCCTTCCGAGTG TCCCGCGAAGGAGGGAGCGCAGACTTGTATGTTTCCTAAGGAAACGAACGTGCACATCTC AGAAAACACAGCCGAGCTCAAGGAGCGCGAGCTCTGTCCCCTGAAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 681-828, + strand, RNAz p=0.916827 | |
| 686-828, - strand, RNAz p=0.954569 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 681-828, + strand, RNAz p=0.916827 | |
| 686-828, - strand, RNAz p=0.954569 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr17 (3009625-3009478) | |
| 1-148, gnl|canFam2|chr15 (54417683-54417847) | |
| 1-148, gnl|danRer3|chr1 (24101694-24101859) | |
| 1-148, gnl|dasNov1|scaffold_71641 (4765-4601) | |
| 1-148, gnl|echTel1|scaffold_312071 (57685-57854) | |
| 1-148, gnl|fr1|chrUn (13588638-13588794) | |
| 1-148, gnl|galGal2|chr4 (20596518-20596682) | |
| 1-148, gnl|hg17|chr4 (154881286-154881450) | |
| 1-148, gnl|Hg17|chr4 (154881344-154881491) | |
| 1-148, gnl|loxAfr1|scaffold_1214 (113053-112890) | |
| 1-148, gnl|mm7|chr3 (84037424-84037229) | |
| 1-148, gnl|Mm7|chr3 (84037333-84037186) | |
| 1-148, gnl|monDom2|scaffold_9 (23918067-23918231) | |
| 1-148, gnl|oryCun1|scaffold_40649 (962-781) | |
| 1-148, gnl|panTro1|chr3_random (21254927-21254763) | |
| 1-148, gnl|rheMac2|chr5 (145808547-145808711) | |
| 1-148, gnl|rn3|chr2 (175643092-175642897) | |
| 1-148, gnl|tetNig1|chr1_random (1020531-1020375) | |
| 1-148, gnl|xenTro1|scaffold_93 (1233088-1232924) | |
| 289-518, gnl|bosTau2|chr17 (3008386-3008160) | |
| 289-518, gnl|Hg17|chr4 (154882556-154882801) | |
| 289-518, gnl|Mm7|chr3 (84035770-84035525) | |
| 565-828, gnl|bosTau2|chr17 (3008137-3007871) | |
| 565-828, gnl|canFam2|chr15 (54419214-54419551) | |
| 565-828, gnl|danRer3|chr1 (24110435-24110712) | |
| 565-828, gnl|dasNov1|scaffold_5163 (18729-18389) | |
| 565-828, gnl|echTel1|scaffold_312071 (59297-59642) | |
| 565-828, gnl|galGal2|chr4 (20599630-20599970) | |
| 565-828, gnl|hg17|chr4 (154882799-154883145) | |
| 565-828, gnl|Hg17|chr4 (154882832-154883098) | |
| 565-828, gnl|loxAfr1|scaffold_1214 (111474-111128) | |
| 565-828, gnl|mm7|chr3 (84035529-84035186) | |
| 565-828, gnl|Mm7|chr3 (84035494-84035231) | |
| 565-828, gnl|monDom2|scaffold_9 (23921973-23922319) | |
| 565-828, gnl|oryCun1|scaffold_204051 (44513-44841) | |
| 565-828, gnl|panTro1|chr3_random (21253404-21253058) | |
| 565-828, gnl|rheMac2|chr5 (145810083-145810429) | |
| 565-828, gnl|rn3|chr2 (175641312-175640969) | |
| 565-828, gnl|xenTro1|scaffold_93 (1225570-1225236) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr17 (3009625-3009478) | |
| 1-148, gnl|canFam2|chr15 (54417683-54417847) | |
| 1-148, gnl|danRer3|chr1 (24101694-24101859) | |
| 1-148, gnl|dasNov1|scaffold_71641 (4765-4601) | |
| 1-148, gnl|echTel1|scaffold_312071 (57685-57854) | |
| 1-148, gnl|fr1|chrUn (13588638-13588794) | |
| 1-148, gnl|galGal2|chr4 (20596518-20596682) | |
| 1-148, gnl|hg17|chr4 (154881286-154881450) | |
| 1-148, gnl|Hg17|chr4 (154881344-154881491) | |
| 1-148, gnl|loxAfr1|scaffold_1214 (113053-112890) | |
| 1-148, gnl|mm7|chr3 (84037424-84037229) | |
| 1-148, gnl|Mm7|chr3 (84037333-84037186) | |
| 1-148, gnl|monDom2|scaffold_9 (23918067-23918231) | |
| 1-148, gnl|oryCun1|scaffold_40649 (962-781) | |
| 1-148, gnl|panTro1|chr3_random (21254927-21254763) | |
| 1-148, gnl|rheMac2|chr5 (145808547-145808711) | |
| 1-148, gnl|rn3|chr2 (175643092-175642897) | |
| 1-148, gnl|tetNig1|chr1_random (1020531-1020375) | |
| 1-148, gnl|xenTro1|scaffold_93 (1233088-1232924) | |
| 289-518, gnl|bosTau2|chr17 (3008386-3008160) | |
| 289-518, gnl|Hg17|chr4 (154882556-154882801) | |
| 289-518, gnl|Mm7|chr3 (84035770-84035525) | |
| 565-828, gnl|bosTau2|chr17 (3008137-3007871) | |
| 565-828, gnl|canFam2|chr15 (54419214-54419551) | |
| 565-828, gnl|danRer3|chr1 (24110435-24110712) | |
| 565-828, gnl|dasNov1|scaffold_5163 (18729-18389) | |
| 565-828, gnl|echTel1|scaffold_312071 (59297-59642) | |
| 565-828, gnl|galGal2|chr4 (20599630-20599970) | |
| 565-828, gnl|hg17|chr4 (154882799-154883145) | |
| 565-828, gnl|Hg17|chr4 (154882832-154883098) | |
| 565-828, gnl|loxAfr1|scaffold_1214 (111474-111128) | |
| 565-828, gnl|mm7|chr3 (84035529-84035186) | |
| 565-828, gnl|Mm7|chr3 (84035494-84035231) | |
| 565-828, gnl|monDom2|scaffold_9 (23921973-23922319) | |
| 565-828, gnl|oryCun1|scaffold_204051 (44513-44841) | |
| 565-828, gnl|panTro1|chr3_random (21253404-21253058) | |
| 565-828, gnl|rheMac2|chr5 (145810083-145810429) | |
| 565-828, gnl|rn3|chr2 (175641312-175640969) | |
| 565-828, gnl|xenTro1|scaffold_93 (1225570-1225236) |